CN182456
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 243.432 bits (620), Expect = 9.135e-64 Identity = 134/244 (54.92%), Postives = 168/244 (68.85%), Query Frame = -2 Query: 15 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLT------ASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 728 D+F S+LELA+NNDVEG + +ERDPS VDE G+WYGR GSK MV+++RTPLMVAATYGS+DV+KLI+ + ADVN +CG+D+TTALHCAASGG+ N + VV+LLL+AGAD + DA G R DV V+PPKL+ ++ +L++L + SS AE NL V N SSP + S SGSP + SP LK + KKEYP+DPSLPDIKNSIYATDEFRM+S Sbjct: 43 DTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPKLEGVKLMLQELLSADGSST------AERNLRVVTNVPNRS-SSPCHSPTGENGGSGSGSP------LGSPFKLKSTEF-------KKEYPVDPSLPDIKNSIYATDEFRMYS 266
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 4.110e-56 Identity = 124/239 (51.88%), Postives = 158/239 (66.11%), Query Frame = -2 Query: 15 DSFTSMLELASNNDVEGFKRMLER-DPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 728 D+F +LELA+++D EG +R LER P++ DE G+WYGR + V EHRTPLMVAATYGS+ VL+L+L S DVN CGSD TTALHCAASGGS + V+ V+LLL+AGAD D DA+G+RP DV +PPK+ + L+DL G + G +T + S S SSP TA + SP + + M KF D+ +EKKEYP+DPSLPDIKNSIYA+DEFRM+S Sbjct: 65 DAFAGLLELAADDDAEGLRRALERAPPAAADEAGLWYGR-----RKVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPKMFDAKIALQDLLGCPKA-----GHGVLRVVTRAANSMLSPVSSP--TAEDARSPSA-----AVMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYS 286
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 1.562e-55 Identity = 121/237 (51.05%), Postives = 162/237 (68.35%), Query Frame = -2 Query: 15 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 725 SF+++LE A++NDVEGF+R L D S ++++G+WY R ++MV E RTPLMVA+ YGS+DV+K IL A++N+SCG D++TALHCAASG S N +DVV+LLLS GADP+ DA+G+RP+DV V+ P +R ILE++ K ++ S H + S+GSS SS + +GS VSSP DV+F +EKKEYPIDPSLPDIK+ IY+TDEFRMFS Sbjct: 38 SFSALLEFAADNDVEGFRRQLS-DVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAPGLRTILEEIL--KKDEII---SEDLHASSSSLGSSFRSLSS----SPDNGSSLLSLDSVSSPTKPHGTDVTF--ASEKKEYPIDPSLPDIKSGIYSTDEFRMFS 262
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40 Identity = 98/239 (41.00%), Postives = 133/239 (55.65%), Query Frame = -2 Query: 15 FTSMLELASNNDVEGFKRMLERDP-SSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDV--SVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 722 F+ +LE ++ ND+ GFK ++E + S+D G+WYGR GSK+M E RTPLM+AA +GS +V+ I+ DVN SCGSD TALHCA SG SAN +++V LLL A+PD DA G++P DV L P + +LE L K + + +G E S P + SPP G+E+KEYP+DP+LPDIKN +Y TDEFRM++ Sbjct: 11 FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLL--KGNDDLNEVNGQEE-------------SEPEVEVEVEVSPP--------------------RGSERKEYPVDPTLPDIKNGVYGTDEFRMYA 214
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39 Identity = 107/245 (43.67%), Postives = 137/245 (55.92%), Query Frame = -2 Query: 15 DSFTSMLELASNNDVEGFKRML----ERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL-LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVV--VASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 728 D ++LELA+ +DV+G + L E D VG+WYGR E RTPLMVAATYGS V+ L++ L DVN G+D TALHCAASGGS N V VV+LLL+AGADP D+ G P DV + PP LE L G + + V VASG+ SSP L++S SP S + + ++ G KKEYP+DP+LPDIK+S+YA+DEFRMF+ Sbjct: 22 DRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRRALAVATSVASGS---------------SSPPLSSSPDEGNRSP-----SSRSSSLSPITVDRG--KKEYPVDPTLPDIKSSVYASDEFRMFA 239
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30 Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = -2 Query: 351 SFTSMLELASNNDVEGFKRMLERDPS-SVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDV 725 S T +LE A+ +D+ FKR +E +PS +DE G WY R GSK+M E RTPLMVAA YGS++VL I+ +DVN C ++ TALHCA SG S ++V+++++LL A A P+C DANG++P+D+ Sbjct: 29 SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDL 154
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27 Identity = 60/123 (48.78%), Postives = 84/123 (68.29%), Query Frame = -2 Query: 345 MLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSV 713 +LE A+ +D++ FKR +E +DE G+WY R GSK+M E RTPLMVAA YGS+ VL I+ +DVN +CG +R T LHCA +G S N+++V+ +LL A A + DANG++P+DV V Sbjct: 30 LLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFV 152
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24 Identity = 82/234 (35.04%), Postives = 117/234 (50.00%), Query Frame = -2 Query: 15 MLELASNNDVEGFKRMLERDPSSVDEVGIWYG-RVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 713 +LELA+ +DV +R++E + S+ G+WYG +G ++ E RT MVAA YGS VL ++ + A+ + +D T LH AA+GG+AN V RLLL+AGA D A+G R D +LP A+ AE + + + S SP + S SPPSP P KKEYP D +LPD+K+ +++TDEFRM+S Sbjct: 28 LLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGD--LLPR-----------------------ATAAEKAIRLLL---KSPAVSPSSSPKKSASPPSP----PPPQ------------EAKKEYPPDLTLPDLKSGLFSTDEFRMYS 217
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15 Identity = 55/143 (38.46%), Postives = 75/143 (52.45%), Query Frame = -2 Query: 288 MLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS-ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSK 713 +LELA++++ G +L PS DE WY G++ + TPLMVAA YGSV L +L D N + S +T LH AA+GGSA+ V LL+AGADP D R D+ LPP ++ L L G++ Sbjct: 15 LLELAADDNAAGLGELLAAWPSLADEPAPWYTPARGAEPL-----TPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLDHLQRRASDLVALPPNSLPLKNHLLSLLGAR 152 The following BLAST results are available for this feature:
BLAST of CN182456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN182456 ID=CN182456; Name=CN182456; organism=Citrus sinensis; type=EST; length=729bpback to top |