CN182456

Overview
NameCN182456
Unique NameCN182456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 9.135e-64
Identity = 134/244 (54.92%), Postives = 168/244 (68.85%), Query Frame = -2
Query:   15 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLT------ASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 728
            D+F S+LELA+NNDVEG +  +ERDPS VDE G+WYGR  GSK MV+++RTPLMVAATYGS+DV+KLI+  + ADVN +CG+D+TTALHCAASGG+ N + VV+LLL+AGAD +  DA G R  DV V+PPKL+ ++ +L++L  +  SS       AE NL V     N   SSP  +       S SGSP      + SP  LK  +        KKEYP+DPSLPDIKNSIYATDEFRM+S
Sbjct:   43 DTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPKLEGVKLMLQELLSADGSST------AERNLRVVTNVPNRS-SSPCHSPTGENGGSGSGSP------LGSPFKLKSTEF-------KKEYPVDPSLPDIKNSIYATDEFRMYS 266          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.110e-56
Identity = 124/239 (51.88%), Postives = 158/239 (66.11%), Query Frame = -2
Query:   15 DSFTSMLELASNNDVEGFKRMLER-DPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 728
            D+F  +LELA+++D EG +R LER  P++ DE G+WYGR     + V EHRTPLMVAATYGS+ VL+L+L   S DVN  CGSD TTALHCAASGGS + V+ V+LLL+AGAD D  DA+G+RP DV  +PPK+   +  L+DL G   +       G    +T +  S  S  SSP  TA  + SP +     +  M  KF D+     +EKKEYP+DPSLPDIKNSIYA+DEFRM+S
Sbjct:   65 DAFAGLLELAADDDAEGLRRALERAPPAAADEAGLWYGR-----RKVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPKMFDAKIALQDLLGCPKA-----GHGVLRVVTRAANSMLSPVSSP--TAEDARSPSA-----AVMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYS 286          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.562e-55
Identity = 121/237 (51.05%), Postives = 162/237 (68.35%), Query Frame = -2
Query:   15 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 725
            SF+++LE A++NDVEGF+R L  D S ++++G+WY R    ++MV E RTPLMVA+ YGS+DV+K IL    A++N+SCG D++TALHCAASG S N +DVV+LLLS GADP+  DA+G+RP+DV V+ P    +R ILE++   K   ++   S   H  + S+GSS    SS    +  +GS       VSSP      DV+F   +EKKEYPIDPSLPDIK+ IY+TDEFRMFS
Sbjct:   38 SFSALLEFAADNDVEGFRRQLS-DVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAPGLRTILEEIL--KKDEII---SEDLHASSSSLGSSFRSLSS----SPDNGSSLLSLDSVSSPTKPHGTDVTF--ASEKKEYPIDPSLPDIKSGIYSTDEFRMFS 262          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 98/239 (41.00%), Postives = 133/239 (55.65%), Query Frame = -2
Query:   15 FTSMLELASNNDVEGFKRMLERDP-SSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDV--SVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 722
            F+ +LE ++ ND+ GFK ++E +   S+D  G+WYGR  GSK+M  E RTPLM+AA +GS +V+  I+     DVN SCGSD  TALHCA SG SAN +++V LLL   A+PD  DA G++P DV    L P   +   +LE L   K +  +   +G E              S P +      SPP                     G+E+KEYP+DP+LPDIKN +Y TDEFRM++
Sbjct:   11 FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLL--KGNDDLNEVNGQEE-------------SEPEVEVEVEVSPP--------------------RGSERKEYPVDPTLPDIKNGVYGTDEFRMYA 214          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39
Identity = 107/245 (43.67%), Postives = 137/245 (55.92%), Query Frame = -2
Query:   15 DSFTSMLELASNNDVEGFKRML----ERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL-LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVV--VASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 728
            D   ++LELA+ +DV+G +  L    E      D VG+WYGR         E RTPLMVAATYGS  V+ L++ L    DVN   G+D  TALHCAASGGS N V VV+LLL+AGADP   D+ G  P DV + PP        LE L G + +  V   VASG+               SSP L++S      SP     S  +   + ++   G  KKEYP+DP+LPDIK+S+YA+DEFRMF+
Sbjct:   22 DRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRRALAVATSVASGS---------------SSPPLSSSPDEGNRSP-----SSRSSSLSPITVDRG--KKEYPVDPTLPDIKSSVYASDEFRMFA 239          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = -2
Query:  351 SFTSMLELASNNDVEGFKRMLERDPS-SVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDV 725
            S T +LE A+ +D+  FKR +E +PS  +DE G WY R  GSK+M  E RTPLMVAA YGS++VL  I+    +DVN  C  ++ TALHCA SG S ++V+++++LL A A P+C DANG++P+D+
Sbjct:   29 SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDL 154          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27
Identity = 60/123 (48.78%), Postives = 84/123 (68.29%), Query Frame = -2
Query:  345 MLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSV 713
            +LE A+ +D++ FKR +E     +DE G+WY R  GSK+M  E RTPLMVAA YGS+ VL  I+    +DVN +CG +R T LHCA +G S N+++V+ +LL A A  +  DANG++P+DV V
Sbjct:   30 LLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFV 152          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.426e-24
Identity = 82/234 (35.04%), Postives = 117/234 (50.00%), Query Frame = -2
Query:   15 MLELASNNDVEGFKRMLERDPSSVDEVGIWYG-RVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSKNSSVVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPYRLVSSPMALKFNDVSFGAGAEKKEYPIDPSLPDIKNSIYATDEFRMFS 713
            +LELA+ +DV   +R++E +  S+   G+WYG   +G  ++  E RT  MVAA YGS  VL  ++  + A+   +  +D  T LH AA+GG+AN V   RLLL+AGA  D   A+G R  D  +LP                        A+ AE  + + +    S   SP  +   S SPPSP      P               KKEYP D +LPD+K+ +++TDEFRM+S
Sbjct:   28 LLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGD--LLPR-----------------------ATAAEKAIRLLL---KSPAVSPSSSPKKSASPPSP----PPPQ------------EAKKEYPPDLTLPDLKSGLFSTDEFRMYS 217          
BLAST of CN182456 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 55/143 (38.46%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  288 MLELASNNDVEGFKRMLERDPSSVDEVGIWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS-ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCADANGHRPIDVSVLPPKLDSMRAILEDLFGSK 713
            +LELA++++  G   +L   PS  DE   WY    G++ +     TPLMVAA YGSV  L  +L      D N +  S  +T LH AA+GGSA+    V  LL+AGADP   D    R  D+  LPP    ++  L  L G++
Sbjct:   15 LLELAADDNAAGLGELLAAWPSLADEPAPWYTPARGAEPL-----TPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLDHLQRRASDLVALPPNSLPLKNHLLSLLGAR 152          
The following BLAST results are available for this feature:
BLAST of CN182456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
C3H30_ARATH9.135e-6454.92Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H24_ORYSJ4.110e-5651.88Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H56_ARATH1.562e-5551.05Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H66_ARATH9.199e-4041.00Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H50_ORYSJ3.495e-3943.67Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H29_ARATH2.271e-3050.00Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH4.009e-2748.78Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H33_ORYSJ1.426e-2435.04Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H67_ORYSJ2.064e-1538.46Zinc finger CCCH domain-containing protein 67 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002H21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182456 ID=CN182456; Name=CN182456; organism=Citrus sinensis; type=EST; length=729bp
CAGGCGAATCTTGATGAGAACATACGGAACTCATCAGTGGCATATATGCT
ATTTTTAATGTCTGGAAGAGAGGGGTCAATCGGGTACTCCTTCTTCTCAG
CTCCAGCGCCAAATGACACATCATTAAACTTTAAAGCCATTGGAGAGGAT
ACCAGCCGGTAAGGAGACGGCGGTGACCCACTGGCGGATGCAGTAAGGAG
TGGTGAGCTATAATCAGAATTGGAGGAACCAATAGATACAGTCAAATTGT
GCTCAGCACCTGAGGCAACAACAACAACAGATGAATTCTTGCTTCCAAAA
AGATCTTCAAGGATAGCCCTCATACTATCTAATTTTGGTGGCAGAACACT
GACATCAATAGGACGATGCCCATTAGCATCAGCACAATCTGGATCTGCAC
CGGCAGATAAAAGCAACCTAACAACATCAACAACATTAGCAGAACCTCCA
GAAGCAGCGCAGTGAAGGGCAGTGGTTCTGTCCGAGCCGCACGAAACATT
TACATCGGCCGAAGAATGCAACAGTATAAGCTTAAGAACATCAACACTGC
CATAAGTAGCAGCAACCATTAAAGGAGTCCGATGCTCAGACACCATCTGT
TTCGATCCATTAACACGCCCGTACCATATTCCAACCTCATCGACGGAAGA
AGGATCCCGCTCTAACATCCGCTTAAAGCCTTCAACATCATTGTTAGAAG
CAAGTTCCAGCATGCTGGTAAAAGAATCT
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