FC921844

Overview
NameFC921844
Unique NameFC921844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921844_ssr389 microsatellite FC921844_ssr389:389..400. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig68 contig Csv1_Contig68:391..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: YBA9_SCHPO (Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe GN=SPBC119.09c PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-14
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = -3
Query:    2 NRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 280
            N N+ W  Y G W  ++ ++    L+  ++ + S  +AWTL +L++   ++  FHW  GTPF  + G Y+ LT WEQ D G Q T  RK+L V
Sbjct:   33 NYNSNWVNYKGAWVIHIVLIAALRLIFHAIPSVSRELAWTLTNLTYMAGSFIMFHWVTGTPFEFNGGAYDRLTMWEQLDEGNQYTPARKYLLV 125          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML2_HUMAN (ORM1-like protein 2 OS=Homo sapiens GN=ORMDL2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.732e-13
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:    2 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 298
            V  +++N NT      G+W  Y+ ++ +  +++LS+   S  + WTL ++ H   TY F H  KGTPF   DQG    LT WEQ D G Q T +RKFL++
Sbjct:    5 VAHSEVNPNTRVMNSRGIWLAYIILVGLLHMVLLSIPFFSIPVVWTLTNVIHNLATYVFLHTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML1_MOUSE (ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:    2 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 298
            V  +++N NT      G+W TY   + +  +++LS+  CS  +AWTL ++ H    Y F H  KGTPF   DQG    LT WEQ D G Q T +RKF T+
Sbjct:    5 VAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFCSVPVAWTLTNIIHNLGMYVFLHAVKGTPFETPDQGRARLLTHWEQLDYGVQFTSSRKFFTI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML2_BOVIN (ORM1-like protein 2 OS=Bos taurus GN=ORMDL2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.054e-12
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:    2 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 298
            V  +++N NT      G+W  Y+ ++ +  +++LS+   S  + WTL ++ H  V Y F H  KGTPF   DQG    LT WEQ D G Q T +RKFL++
Sbjct:    5 VAHSEVNPNTRVMNSRGIWLAYIILVGLLHVVLLSIPFFSIPVVWTLTNVIHNLVMYVFLHTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML3_HUMAN (ORM1-like protein 3 OS=Homo sapiens GN=ORMDL3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.377e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -3
Query:    2 TDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 289
            +++N NT      G+W +Y+  + +  +++LS+   S  + WTL +L H    Y F H  KGTPF   DQG    LT WEQ D G Q T +RKFLT+
Sbjct:    8 SEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML3_DANRE (ORM1-like protein 3 OS=Danio rerio GN=ormdl3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.377e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -3
Query:    2 TDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 289
            +++N NT      G+W +Y+  + +  +++LS+   S  + WTL +L H    Y F H  KGTPF   DQG    LT WEQ D G Q T +RKFLT+
Sbjct:    8 SEVNPNTRVMNSRGIWLSYVLGIGLLHIILLSIPFVSVPVVWTLTNLIHNMCMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML3_RAT (ORM1-like protein 3 OS=Rattus norvegicus GN=Ormdl3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -3
Query:    2 TDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 289
            +++N NT      G+W +Y+  + +  +++LS+   S  + WTL +L H    Y F H  KGTPF   DQG    LT WEQ D G Q T +RKFLT+
Sbjct:    8 SEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML3_PONAB (ORM1-like protein 3 OS=Pongo abelii GN=ORMDL3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -3
Query:    2 TDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 289
            +++N NT      G+W +Y+  + +  +++LS+   S  + WTL +L H    Y F H  KGTPF   DQG    LT WEQ D G Q T +RKFLT+
Sbjct:    8 SEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML3_MOUSE (ORM1-like protein 3 OS=Mus musculus GN=Ormdl3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -3
Query:    2 TDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 289
            +++N NT      G+W +Y+  + +  +++LS+   S  + WTL +L H    Y F H  KGTPF   DQG    LT WEQ D G Q T +RKFLT+
Sbjct:    8 SEVNPNTRVMNSRGIWLSYVLAIGLLHVVLLSIPFVSVPVVWTLTNLIHNLGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTI 104          
BLAST of FC921844 vs. ExPASy Swiss-Prot
Match: ORML2_MOUSE (ORM1-like protein 2 OS=Mus musculus GN=Ormdl2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.067e-12
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:    2 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPF-ADDQGIYNGLTWWEQNDNGKQLTRNRKFLTV 298
            V  +++N NT      G+W  Y+ ++ +  +++LS+   S  + WTL ++ H    Y F H  KGTPF   DQG    LT WEQ D G Q T +RKFL++
Sbjct:    5 VAHSEVNPNTRVMNSRGIWLAYIILVGLLHVVLLSIPFFSIPVVWTLTNVIHNLAMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSI 104          
The following BLAST results are available for this feature:
BLAST of FC921844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YBA9_SCHPO4.280e-1437.63Uncharacterized protein C119.09c OS=Schizosaccharo... [more]
ORML2_HUMAN4.732e-1339.00ORM1-like protein 2 OS=Homo sapiens GN=ORMDL2 PE=2... [more]
ORML1_MOUSE6.180e-1341.00ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2... [more]
ORML2_BOVIN1.054e-1239.00ORM1-like protein 2 OS=Bos taurus GN=ORMDL2 PE=2 S... [more]
ORML3_HUMAN1.377e-1240.21ORM1-like protein 3 OS=Homo sapiens GN=ORMDL3 PE=2... [more]
ORML3_DANRE1.377e-1240.21ORM1-like protein 3 OS=Danio rerio GN=ormdl3 PE=2 ... [more]
ORML3_RAT1.798e-1240.21ORM1-like protein 3 OS=Rattus norvegicus GN=Ormdl3... [more]
ORML3_PONAB1.798e-1240.21ORM1-like protein 3 OS=Pongo abelii GN=ORMDL3 PE=2... [more]
ORML3_MOUSE1.798e-1240.21ORM1-like protein 3 OS=Mus musculus GN=Ormdl3 PE=2... [more]
ORML2_MOUSE3.067e-1238.00ORM1-like protein 2 OS=Mus musculus GN=Ormdl2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC06053A09T7 RindPdigS Citrus sinensis cDNA clone C06053A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921844 ID=FC921844; Name=FC921844; organism=Citrus sinensis; type=EST; length=465bp
CAACAGTCAAAAACTTTCTATTGCGGGTGAGTTGCTTTCCATTATCATTC
TGCTCCCACCAGGTCAAGCCGTTGTAAATCCCCTGGTCATCGGCAAAGGG
TGTCCCCTTCTTCCAGTGAAAGAAGTGATAAGTAACGAAAAAATGAGAGA
GATGAACGAGGGTCCAAGCCATGCCGGAAGAGCAATTGAAGAGAGAAAGA
ACGAGAAGCCATGATATGAATAGAATGGATAAGTATGTCGTCCATACTCC
TGGATACGTGAACCACTCCGTGTTCCTGTTCAGATCCGTCGGTGGCACTG
TCCTTACATACATCTTCTCTTCTCCTTTCCTCACTAACAATCAACTCTTC
GTCTTCTTTACTTACTCACTATTTATACCTTTTTGCTTTTTCTTTCTTTC
TCTCTTTCCTTCTTTAATCTAATGACGATGATGATGTATGCGTTTCAGAT
TTCAGATTTCCCCGC
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