CX675973

Overview
NameCX675973
Unique NameCX675973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.366e-37
Identity = 80/120 (66.67%), Postives = 88/120 (73.33%), Query Frame = -2
Query:  195 TKPTXXXXXXXXXXXXXKISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 554
            TKPT              +SKSVKAGLQFPVGRIAR+LKKGRYA R GSGAP+Y+              AGNAARDNKKNRINPRH+ LA+RND+ELG+LL GVTIASGGVLPNINPVLL
Sbjct:    8 TKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLL 127          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.742e-37
Identity = 81/123 (65.85%), Postives = 90/123 (73.17%), Query Frame = -2
Query:  195 MEVTKPTXXXXXXXXXXXXXKISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 563
            M+ TK T              ++KS+KAGLQFPVGRI R+LKKGRYAQR+GSGAPIY+              AGNAARDNKK+RI PRHVLLAVRND+ELGKLL GVTIASGGVLPNINPVLL
Sbjct:    1 MDATKTTKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLL 123          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 78/102 (76.47%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI RFLKKGRYAQR+GSGAP+Y+              AGNAARDNKKNRI PRHVLLAVRND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   24 VSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 125          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.083e-35
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLA+RND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 127          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.083e-35
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLA+RND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 127          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.083e-35
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLA+RND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.083e-35
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLA+RND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +++SV+AGLQFPVGR+ RFLKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI+PRH+LLAVRND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   24 VTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLL 125          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +++S++AGLQFPVGRI R+LKKGRYAQR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLAVRND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   24 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 125          
BLAST of CX675973 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = -2
Query:  195 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMXXXXXXXXXXXXXXAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLL 500
            +S+SVKAGLQFPVGRI R+LK+GRY+QR+G+GAP+Y+              AGNAARDNKKNRI PRHVLLA+RND+ELGKLL GVTIA GGVLPNINPVLL
Sbjct:   27 VSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128          
The following BLAST results are available for this feature:
BLAST of CX675973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
H2A5_ARATH3.366e-3766.67Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A1_SOLLC5.742e-3765.85Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_EUPES1.671e-3676.47Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A6_ORYSJ1.083e-3573.53Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI1.083e-3573.53Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A5_ORYSJ1.083e-3573.53Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI1.083e-3573.53Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A1_PEA2.412e-3571.57Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A2_MEDTR5.374e-3571.57Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A4_ORYSJ7.019e-3571.57Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675973 ID=CX675973; Name=CX675973; organism=Citrus sinensis; type=EST; length=639bp
TTTTTTTAGCAAAAAGGCAAAATTTCCATTAAAGCCACTTTACACGAAAA
AGGAAGAAAATAGAACAAAAATTACATCAAAGGCCTTTAGTTCTAGTACT
ATTGTTACTGGTGTCAACATTATCGTAAATTTTAAGCCTTTTTCGGGGAC
TTTGGGGATTTCGGGGTCTCAGATGTAGAAGTTGTTTTCTTTGGCAGAAG
GACCGGATTGATATTTGGAAGTACACCACCACTTGCTATTGTCACGCCTT
GGAGAAGCTTCCCCAGTTCGTCGTCGTTTCTAACTGCCAATAGCACGTGC
CTCGGGTTTATTCTGTTCTTCTTATTGTCACGTGCTGCGTTCCCCGCCAA
CTCCAACACCTCAGCGGCGAGATATTCTAAAACGGCGGCCATATAAATGG
GGGCCCCAGAGCCCATTCTCTGGGCATAGCGACCCTTTTTCAGGAACCGG
GCGATACGACCGACCGGGAATTGGAGACCGGCTTTCACTGATTTCGATAT
CTTCTTCCTCTCGCCGCCGCCTCTCCTTCCTCCCGCTCCTTTCGTTGGCT
TCGTCACCTCCATTTGGTCTTAATATGCCGCCGACGGAAAAGTTGAGTTT
CTTCTGAAAAGATTTTGTTTGTTTACGACTTTCGAGCCT
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