CN182428
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.065e-32 Identity = 92/186 (49.46%), Postives = 107/186 (57.53%), Query Frame = 2 Query: 68 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619 MAQ MLLM GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP AIGALGDRG+FVDEP TGL AV Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAV 176 HSP 2 Score: 73.9442 bits (180), Expect = 7.099e-13 Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2 Query: 371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP AI GKF+ + +E Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 8.346e-30 Identity = 85/184 (46.20%), Postives = 94/184 (51.09%), Query Frame = 2 Query: 68 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619 MAQTMLL + ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP AIGAL DRGKF+D+P PTGL AV Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAV 177 HSP 2 Score: 70.0922 bits (170), Expect = 1.025e-11 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKFV + +E Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29 Identity = 88/186 (47.31%), Postives = 95/186 (51.08%), Query Frame = 2 Query: 68 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP AIGALGDRGKFVD+P PTGL AV Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAV 179 HSP 2 Score: 69.707 bits (169), Expect = 1.339e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.507e-28 Identity = 85/186 (45.70%), Postives = 94/186 (50.54%), Query Frame = 2 Query: 68 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP AIGALGDRG+F+D+P TGL AV Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAV 179 HSP 2 Score: 69.707 bits (169), Expect = 1.339e-11 Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP AI GKF+ + +E Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.613e-27 Identity = 68/101 (67.33%), Postives = 70/101 (69.31%), Query Frame = 2 Query: 317 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP AIGALGDRGKFVD+P PTGL AV Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAV 167 HSP 2 Score: 70.0922 bits (170), Expect = 1.025e-11 Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2 Query: 371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP AI GKF+ + E Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263 The following BLAST results are available for this feature:
BLAST of CN182428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN182428 ID=CN182428; Name=CN182428; organism=Citrus sinensis; type=EST; length=620bpback to top |