CN182428

Overview
NameCN182428
Unique NameCN182428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12634 contig Csv1_Contig12634:19..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.065e-32
Identity = 92/186 (49.46%), Postives = 107/186 (57.53%), Query Frame = 2
Query:   68 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP            AIGALGDRG+FVDEP   TGL  AV
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAV 176          

HSP 2 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP            AI      GKF+ + +E
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272          
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.346e-30
Identity = 85/184 (46.20%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   68 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP            AIGAL DRGKF+D+P  PTGL  AV
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAV 177          

HSP 2 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKFV + +E
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273          
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29
Identity = 88/186 (47.31%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   68 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP            AIGALGDRGKFVD+P  PTGL  AV
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAV 179          

HSP 2 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.507e-28
Identity = 85/186 (45.70%), Postives = 94/186 (50.54%), Query Frame = 2
Query:   68 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP            AIGALGDRG+F+D+P   TGL  AV
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAV 179          

HSP 2 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of CN182428 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.613e-27
Identity = 68/101 (67.33%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  317 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDEPTGLGGAV 619
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP            AIGALGDRGKFVD+P  PTGL  AV
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAV 167          

HSP 2 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  371 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXEAIGALGDRGKFVDEPDE 595
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI      GKF+ +  E
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263          
The following BLAST results are available for this feature:
BLAST of CN182428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL3.065e-3249.46Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_TOBAC8.346e-3046.20Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLLC1.090e-2947.31Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG3.507e-2845.70Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH6.613e-2767.33Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182428 ID=CN182428; Name=CN182428; organism=Citrus sinensis; type=EST; length=620bp
GAGGGAAACTAGCTTTGCTGGCTTCAGAAATCTAGCAGAGTGACAACATA
TTATTCATTCAATATTAATGGCTCAAACTATGCTGCTCATGTCTGGGGTT
TCCACTAGCCACGCAGGAAACTTGAAAAGAGACTCTTTAGTCACATTTCA
AACGCAGATGCTGAGACCTAAGCCATTCTCTCATCTTATGTTCAACCCAC
TCTCTAATGAATCTTTAACTGCTGCTGCGGCTTCTTCATCATCTAAAGCT
TTTTCTACTGTTGCCCTCTTCAAATCTAAAACCAAAGCTCCACCCAAGAC
CAAGAAGGTTGAATCAAAGCCAAAAGTTGAGGATGGTATCTTTGGGACCT
CTGGAGGATTTGGTTTTACAAAGCAAAATGAGCTCTTTGTTGGTCGTGTT
GCCATGATTGGCTTTGCTGCTTCCTTGTTGGGTGAGGGAATAACTGGGAA
GGGGATTCTAGCTCAGTTGAATTTGGAGACCGGAATTCCAATCTATGAAG
CAGAGCCACTGCTTTTATTTTTCATCCTGTTCACCTTGCTTGAAGCAATT
GGAGCTTTGGGTGACCGTGGTAAGTTCGTTGATGAGCCAGATGAGCCCAC
TGGGCTCGGAGGAGCTGTCA
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