CN182427

Overview
NameCN182427
Unique NameCN182427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig448 contig Csv1_Contig448:78..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182427 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.047e-81
Identity = 159/219 (72.60%), Postives = 173/219 (79.00%), Query Frame = -1
Query:   94 STVALFXXXXXXXXXXXKVESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 750
            +TVALF             + K KVED           TKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP          LGAIGAL DRGKF+D+P  PTGL  AVIPPGKG +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct:   56 TTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274          
BLAST of CN182427 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.975e-80
Identity = 153/200 (76.50%), Postives = 166/200 (83.00%), Query Frame = -1
Query:   94 ESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 693
            + K KVED           TKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP          LGAIGALGDRGKFVD+P  PTGL  AVIPPGK  +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = -1
Query:  106 VIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 387
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168          
BLAST of CN182427 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.354e-79
Identity = 150/200 (75.00%), Postives = 165/200 (82.50%), Query Frame = -1
Query:   94 ESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 693
            + K KVED           TKQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP          LGAIGALGDRG+F+D+P   TGL  AVIPPGK  +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 90.5077 bits (223), Expect = 1.067e-17
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = -1
Query:  106 VIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 387
            V PP +  +   G+       GFTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      G+F+ D
Sbjct:   73 VAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168          
BLAST of CN182427 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.084e-78
Identity = 159/220 (72.27%), Postives = 173/220 (78.64%), Query Frame = -1
Query:   94 FSTVALFXXXXXXXXXXXKVESKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 753
            F T+ALF             + K KVED           TK+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP          LGAIGALGDRG+FVDEP   TGL  AVIPPGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct:   58 FKTLALFKSKAKAPKKVE--KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT--TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273          
BLAST of CN182427 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.767e-77
Identity = 153/198 (77.27%), Postives = 162/198 (81.82%), Query Frame = -1
Query:   94 KPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 687
            K KVED           TK NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP          LGAIGALGDRGKFVD+P  PTGL  AVIPPGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264          
The following BLAST results are available for this feature:
BLAST of CN182427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_TOBAC1.047e-8172.60Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLLC1.975e-8076.50Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG6.354e-7975.00Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SPIOL1.084e-7872.27Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_ARATH7.767e-7777.27Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002G24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182427 ID=CN182427; Name=CN182427; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTGACGACAAATATTATCTTTTACATTTAATGGAAATTCAAGTT
TATCATAATAAAGTAAACAGGAACAGCTTCCACGTTTCATCTACTCCTCA
TCTTCATCTGTGACAAATTTACCAGTTCCAGGATTCAATGCGGCAACAAA
GAAGAAGATAACGTTGAACAGCACAAGTGGTTCGATTTCGTTGATGGGGA
TCCCAGTCTCAATGTTGAGTTGTGCTAGAGCTCCTTTCCCTGTTATGATT
TCTCCAATCAAAGAGAATGCAATACCCAACTGAGCCAATCTTCCCACAAA
CAGCTCGTTTGACTTCGTGAATCCAAATATGGGACCTCCTTCCTTGAGAC
CCAATGCTGATCTCAAGCCTTTGCCTGGAGGAATGACAGCTCCTCCGAGC
CCAGTGGGCTCATCTGGCTCATCAACGAACTTACCACGGTCACCCAAAGC
TCCAATTGCTCCAAGCAAGGTGAACAGGATGAAAAATAAAAGCAGTGGCT
CTGCTTCATAGATTGGAATTCCGGTCTCCAAATTCAACTGAGCTAGAATC
CCCTTCCCAGTTATTCCCTCACCCAACAAGGAAGCAGCAAAGCCAATCAT
GGCAACACGACCAACAAAGAGCTCATTTTGCTTTGTAAAACCAAATCCTC
CAGAGGTCCCAAAGATACCATCCTCAACTTTTGGCTTTGATTCAACCTTC
TTGGTCTTGGGTGGAGCTTTGGTTTTAGATTTGAAGAGGGCAACAGTAGA
AAAAGC
back to top