CN182424

Overview
NameCN182424
Unique NameCN182424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182424_ssr182 microsatellite CN182424_ssr182:182..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN182424 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.161e-17
Identity = 54/88 (61.36%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  222 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFA 485
            MASVTGTS  M S   S   +  R            GKSF  LRMRSA RF V CAAKPETV+KVC IVKKQLALP D+ VTGESKFA
Sbjct:    1 MASVTGTSISMASFKASLAPS--RVSNLRSVSLPIKGKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFA 85          
BLAST of CN182424 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  225 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAA 488
            ++  G S C+ S SCS     GR             KSFPSLR       RVSC AKPETV KVC+IVKKQLALP D+ V G SKF+A
Sbjct:    3 SAAAGASICIKSASCS-PLAPGRISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSA 89          
BLAST of CN182424 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  225 ASVTGTSACMTSLSCSFKQTQ--GRXXXXXXXXXXXXGKSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAA 488
            A+   +  C+ S SCS  + Q                GK FPSLR    P  FRV C AK ETV +VC+IVKKQLALP D+ V G SKF+A
Sbjct:    4 AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSA 94          
BLAST of CN182424 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  225 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRM-RSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAA 488
            ++  G S C+ S S S     GR             KSFPSL+  +S+   RVSC AKPETV KVC IVKKQLALP D+ V G SKF+A
Sbjct:    3 SAAAGASICIKSASFS-PLAPGRISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSA 90          
The following BLAST results are available for this feature:
BLAST of CN182424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ACP1_CASGL1.161e-1761.36Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA4.564e-1451.14Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA9.517e-1246.15Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA9.517e-1249.44Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182424 ID=CN182424; Name=CN182424; organism=Citrus sinensis; type=EST; length=527bp
GAGGCCGAAGCAAGCAACAGCCGAAACACAAATAGTGTTGCAAGTGCTTC
GAGAGTCCCATCTATTTATAAAAGCTACCAGCCGGCCTTGTTAACACATT
GCTCTCCTCTCAGTCTCAGACACACATTACATAGCACGCAGTCTTCGTGC
TCTTCGTCGTCCTCTCTCTCGCTCTCTCTCGCTCTCTCTCTTTTGAACTT
CAAATCTCAGATCTCTATTCAATGGCTTCAGTTACAGGAACTTCAGCCTG
CATGACCTCTCTGTCTTGCTCTTTCAAGCAGACCCAGGGTAGGATCTCTA
GTGTGAATTCAGTTTCACTTTCCATCAATGGGAAAAGCTTCCCATCCCTT
AGAATGCGATCAGCACCCCGCTTCCGGGTTTCCTGTGCGGCCAAGCCTGA
GACTGTGGATAAGGTTTGTCAAATTGTGAAGAAGCAGTTGGCACTCCCAG
CAGATACTACCGTTACCGGGGAGTCAAAATTCGCTGCCCCTTGGAGCTGA
TTCTCTTGATACGGGTTGAGATTGTGA
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