CN182412

Overview
NameCN182412
Unique NameCN182412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182412_ssr124 microsatellite CN182412_ssr124:124..139. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13005 contig Csv1_Contig13005:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.694e-64
Identity = 114/178 (64.04%), Postives = 144/178 (80.90%), Query Frame = -2
Query:  170 SLRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDDNQRLPSLEHFIKSLL 703
            +LR +W SLCKAFLVEAKWF SG++P +EEY+KNG+ SSGVH+ ++H + LLG  +T+E VELI+SNP I+SS ATILRLWDDLGSAKDENQDG DGSY+  Y+ E++ S  +EA+     KIS AWKRLN+ECL P PFS SF++A LN+AR VPLMYSYDD+QRLP  + ++KSL+
Sbjct:  394 ALRQSWASLCKAFLVEAKWFNSGYLPTTEEYMKNGVVSSGVHLVMLHAYILLGEELTKEKVELIESNPGIVSSAATILRLWDDLGSAKDENQDGTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRECLNPCPFSRSFSKACLNIARTVPLMYSYDDDQRLP--DEYLKSLM 569          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 70/185 (37.84%), Postives = 105/185 (56.76%), Query Frame = -2
Query:  155 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAIN-KISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDDNQRLPSLE--HFIKSLLSESVP 700
            L+ AW  LC+ +LVEAKW+++ + P  +EY++N   S G    LVH +F + + IT+E ++ ++  P II  ++ I RL DDLG++ DE + G     I  YM E    A+EE  +  I   IS  WK++NK+    +PFS  F   +LNLARM   +Y + D   L + E    I SLL + +P
Sbjct:  411 LKKAWVDLCRYYLVEAKWYSNKYRPSLQEYIENAWISIGAPTILVHAYFFVTNPITKEALDCLEEYPNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNE--TGASEEGAREYIKYLISATWKKMNKDRAASSPFSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIP 593          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 66/187 (35.29%), Postives = 104/187 (55.61%), Query Frame = -2
Query:  155 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFS--ASFTRASLNLARMVPLMYSYDDNQRLP---SLEHFIKSLLSESVP 700
            L+  WT L K FL E+KW+ +GH P  EEY++NG+ SS V   L+H+F +L   I+++T+     N +++ S ATILRL +DL ++ +E   G     +  YM E R ++ EEA++   + ISD+W  +N +    +  S    F  A+ NL R+V  +Y + D    P       +I+S+L   VP
Sbjct:  414 LKQVWTDLFKTFLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKNHSVVRSCATILRLANDLATSTEEMARGDSPKSVQCYMYETR-ASEEEARRHMQSMISDSWDIINSDLKTAHTSSLPRGFLAAAANLNRVVQCIYRHGDGHGSPEKTKTVDYIQSVLFNPVP 599          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 63/163 (38.65%), Postives = 93/163 (57.06%), Query Frame = -2
Query:  212 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDDN 700
            LR AW  L +++L+EAKW+  GH P  EEY+KN   S G    L H+FF L   I EE  E +     I+ ++ TILRL DD+G++ DE + G     +  YM E + ++ EEA++   + I   WK +NKE +  + FS  F + S NLARM   +Y ++ +
Sbjct:  409 LRKAWVDLVESYLIEAKWYYMGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEDAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNE-KNASEEEAREHVRSLIDQTWKMMNKE-MMTSSFSKYFVQVSANLARMAQWIYQHESD 569          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 62/164 (37.80%), Postives = 88/164 (53.66%), Query Frame = -2
Query:  215 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVE-LIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAIN-KISDAWKRLNKECLCPNPFSASFTRASLNLARMVPLMYSYDD 700
            L+N+W  LC+ +L EAKWF SG+ P  ++Y++N   S G  +  V+ FF L   IT E +E L + + A     + +LRL DDLG+  DE + G     I  YM  H   A+E+  +  I   IS+ WK +N E    + FS  F +A  NL RM   MY + D
Sbjct:  431 LKNSWAELCRCYLEEAKWFYSGYKPTLKKYIENASLSIGGQIIFVYAFFSLTKSITNEALESLQEGHHAACRQGSLMLRLADDLGTLSDEMKRGDVPKSIQCYM--HDTGASEDEAREHIKFLISEIWKEMNDEDEYNSIFSKEFVQACKNLGRMSLFMYQHGD 592          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 67/190 (35.26%), Postives = 105/190 (55.26%), Query Frame = -2
Query:  149 SLRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLG-HGITEETVELIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAI-NKISDAWKRLNKECL-CPNPFSASFTRASLNLARMVPLMYSYDDNQRLPSLEHFIK--SLLSESVPTE 703
            S++NAW  L +A+LVEAKW+ S + P+ EEYL+NG+ S      ++ I +L G + I ++ +E ++SNP I+  ++ I RL DDLG++ DE Q G     I  YM  H   A+EE  +  I + +   WK++N       +P + + T   LNL RM   MY + D   + + E      +LL + +P E
Sbjct:  406 SIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYM--HETGASEEVARQHIKDMMRQMWKKVNAYTADKDSPLTGTTTEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLE 592          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 62/192 (32.29%), Postives = 98/192 (51.04%), Query Frame = -2
Query:  149 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDSN-PAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINK-ISDAWKRLNKE---CLCPNPFSASFTRASLNLARMVPLMYSYDDNQRLPSLEHFI---KSLLSESVPTE 700
            L+ +W  LC+ +LVEAKW+  G+ P  EEY++N   S      L+H + +    I+ + +E +  +   I+  +AT+LRL +DLG++  E   G     +  YM  H   A+EE  +  +++ ISD W  +N E       +  S  F  A++NLARM   MY Y D    P     I   +SLL + +P +
Sbjct:  406 LKKSWADLCRTYLVEAKWYKRGYKPSLEEYMQNAWISISAPTILIHFYCVFSDQISVQNLETLSQHRQHIVRCSATVLRLANDLGTSPTELARGDVLKSVQCYM--HETGASEERARDHVHQMISDMWDDMNSETKTACNSSSRSRGFKEAAMNLARMSQCMYQYGDGHGCPEKAKTIDRVQSLLVDPIPLD 595          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  215 LCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVE-LIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAE-EAQKSAINKISDAWKRLNKECLCPNP-FSASFTRASLNLARMVPLMYSYDD 679
            LCK  L EAKWF SG+ P  +EY++NG  S G  V L+H +F   + +T+E +E L D +P I+   + ILRL DDLG+  DE + G     I  YM  H   A+E EA++     IS++WK +N E    N  FS  F +   NL R    +Y Y D
Sbjct:  444 LCKHHLQEAKWFYSGYKPTLQEYVENGWLSVGGQVILMHAYFAFTNPVTKEALECLKDGHPNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYM--HDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGD 599          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 65/191 (34.03%), Postives = 101/191 (52.88%), Query Frame = -2
Query:  155 LRNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVELIDS-NPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINK--ISDAWKRLN---KECLCPNPFSASFTRASLNLARMVPLMYSYDDNQRLP---SLEHFIKSLLSESVP 700
            L+ +W  +C  FL EAKW+ SG+ P  EEY++NG  SS V   L+H+F LL    +++T++++ S N +++ S+ATILRL +DL ++ +E   G     +  +M E   + A EA+  A  +  I  AW  LN   K C         F  A+ NL R+   +Y Y D    P      + ++SLL   +P
Sbjct:  384 LKESWADMCTTFLKEAKWYKSGYKPNFEEYMQNGWISSSVPTILLHLFCLL----SDQTLDILGSYNHSVVRSSATILRLANDLATSSEELARGDTMKSVQCHMHE---TGASEAESRAYIQGIIGVAWDDLNMEKKSC----RLHQGFLEAAANLGRVAQCVYQYGDGHGCPDKAKTVNHVRSLLVHPLP 563          
BLAST of CN182412 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 59/191 (30.89%), Postives = 93/191 (48.69%), Query Frame = -2
Query:  149 RNAWTSLCKAFLVEAKWFASGHMPESEEYLKNGIESSGVHVALVHIFFLLGHGITEETVE-LIDSNPAIISSTATILRLWDDLGSAKDENQDGKDGSYIHYYMKEHRYSAAEEAQKSAINKISDAWKRLNKE----CLCPNPFSASFTRASLNLARMVPLMYSYDDNQRLP---SLEHFIKSLLSESVPTE 697
            + +W  LCKA+LVEAKW+  G+ P  EEY++N   S      L+H +      I+ + +E L+     ++  +AT+LRL +DL ++ DE   G     +  YM E   S  EEA+      IS  W  +N E        +  S  F   ++NLARM   MY + D    P    +   +++LL + +P +
Sbjct:  409 KKSWADLCKAYLVEAKWYKGGYKPSVEEYMQNAWISISAPTMLIHFYCAFSGQISVQILESLVQQQQDVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHETGVS-EEEARTHVQQMISHTWDEMNYEARTAARSSSLLSRRFVETAMNLARMSQCMYQHGDGHGCPDKAKIVDRVQTLLVDPIPLD 598          
The following BLAST results are available for this feature:
BLAST of CN182412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LINS_ARATH6.694e-6464.04Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
MYRS_QUEIL6.545e-2737.84Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS02_ARATH6.125e-2535.29Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
SCS_SALOF8.000e-2538.651,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
TPS2_CANSA3.146e-2137.80(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
RLC1_CITLI1.561e-2035.26(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
CINS_ARATH1.561e-2032.291,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
TPS1_CANSA4.543e-2040.51(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
OCIS_ARATH5.933e-2034.03(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
MYRS2_ARATH2.945e-1930.89Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182412 ID=CN182412; Name=CN182412; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTAGTTCTCCAAAAGAGAATTAGGATAAAACTTAT
AAAATGGAAATTAAAAAGTTACTCTCCTTACAACTTATTTGAGCCACATA
ATTTTTCATAGAAAAGGAGACTGATTAATTAATTAATTAATAAACTCCTT
CAGTGGGTACGCTTTCAGAGAGTAGGGACTTAATGAAATGTTCGAGGCTT
GGTAGGCGTTGGTTGTCATCGTAACTGTACATCAAGGGGACCATTCTTGC
AAGATTGAGAGAAGCCCTCGTGAACGATGCTGAGAATGGATTTGGGCAGA
GGCATTCTTTGTTGAGCCGCTTCCATGCGTCTGAAATTTTATTGATAGCA
CTCTTTTGTGCCTCTTCGGCGGCAGAATATCGGTGTTCCTTCATGTAGTA
ATGGATGTAAGATCCATCCTTACCATCTTGATTCTCATCCTTTGCACTTC
CCAAGTCATCCCAGAGCCGAAGAATTGTTGCGGTTGATGATATTATGGCC
GGGTTACTGTCAATAAGCTCCACCGTTTCCTCAGTTATACCATGACCTAG
GAGAAAAAAAATGTGGACCAGTGCCACATGTACTCCTGAACTCTCAATCC
CATTCTTCAAGTATTCTTCAGACTCAGGCATGTGTCCAGAAGCAAACCAT
TTGGCTTCTACTAGAAATGCTTTGCACAAACTTGTCCACGCATTTCGGAG
GGACTGT
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