CN182405

Overview
NameCN182405
Unique NameCN182405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2646 contig Csv1_Contig2646:764..1371. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB2_GOSHI (V-type proton ATPase subunit B 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 4.544e-73
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQIYIDRQL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQYYSRDAAN
Sbjct:  246 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAAN 386          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.727e-72
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQIYIDRQL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD  N
Sbjct:  347 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDTTN 487          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.255e-72
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQIYIDRQL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRDA +
Sbjct:  343 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDATH 483          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.846e-72
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQIYIDRQL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLD +YSRDAA+
Sbjct:  348 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAFYSRDAAH 488          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.253e-71
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQIYIDRQL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD+ +
Sbjct:  347 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 487          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 4.253e-71
Identity = 132/141 (93.62%), Postives = 137/141 (97.16%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQIYIDRQL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD+ +
Sbjct:  346 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 486          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 5.554e-71
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 428
            GYITEGQIYIDRQL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK V QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KT DQYYSRDA N
Sbjct:  348 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKVVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTHDQYYSRDAGN 488          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.713e-62
Identity = 117/137 (85.40%), Postives = 126/137 (91.97%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 416
            GYITEGQIY+DRQL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHS+VSNQLYANYAIGKDV AMKAVVGEEALSSEDLLYLEFLDKFERKFV QG Y++R IF SLDLAWTLLR+FP+ELL RI  KTL++ Y R
Sbjct:  353 GYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSEVSNQLYANYAIGKDVAAMKAVVGEEALSSEDLLYLEFLDKFERKFVNQGHYEARTIFDSLDLAWTLLRLFPKELLRRITAKTLEKMYER 489          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB2_PONAB (V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.980e-60
Identity = 110/140 (78.57%), Postives = 127/140 (90.71%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 425
            GYITEGQIY+DRQL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVGEEAL+S+DLLYLEFL KFER F+AQG Y++R +F++LD+ W LLRIFP+E+L RIP  TL ++Y RD+A
Sbjct:  370 GYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSA 509          
BLAST of CN182405 vs. ExPASy Swiss-Prot
Match: VATB2_HUMAN (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 1.980e-60
Identity = 110/140 (78.57%), Postives = 127/140 (90.71%), Query Frame = 3
Query:    6 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 425
            GYITEGQIY+DRQL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVGEEAL+S+DLLYLEFL KFER F+AQG Y++R +F++LD+ W LLRIFP+E+L RIP  TL ++Y RD+A
Sbjct:  370 GYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSA 509          
The following BLAST results are available for this feature:
BLAST of CN182405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB2_GOSHI4.544e-7396.45V-type proton ATPase subunit B 2 (Fragment) OS=Gos... [more]
VATB2_ARATH1.727e-7295.74V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB2_HORVU2.255e-7295.74V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB1_HORVU3.846e-7295.74V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB3_ARATH4.253e-7193.62V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB1_ARATH4.253e-7193.62V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB1_GOSHI5.554e-7194.33V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB1_ACEAT4.713e-6285.40V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB2_PONAB1.980e-6078.57V-type proton ATPase subunit B, brain isoform OS=P... [more]
VATB2_HUMAN1.980e-6078.57V-type proton ATPase subunit B, brain isoform OS=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002G12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182405 ID=CN182405; Name=CN182405; organism=Citrus sinensis; type=EST; length=608bp
GAGGGGGATATATCACCGAGGGGCAGATTTACATTGACAGGCAGCTCCAG
AACAGACAGATATATCCTCCGATCAATGTCCTTCCGTCCCTATCTCGTCT
GATGAAGAGTGCTATTGGTGAGGGGATGACTCGTAGGGACCATTCCGATG
TTTCCAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCA
ATGAAGGCTGTGGTCGGAGAAGAAGCACTTTCTTCTGAGGATCTGCTGTA
CTTAGAGTTCCTGGACAAGTTTGAGAGAAAATTTGTTGCTCAAGGAGCTT
ATGACTCTAGGAATATCTTCCAATCTCTTGATCTGGCATGGACACTTCTT
CGCATCTTTCCTCGTGAGCTTCTCCACCGTATACCAGGAAAGACCCTTGA
CCAGTACTACAGCCGTGATGCAGCTAATTGATGAAGAAGCCCTCTCGTAC
TGACATGTACCTTGCTGCCTCATTGGTTTTGTCTACAATTTGTTTATTCA
CCAGCTTTTTGATATAGGTTGCATTTCTCCGTTGAGCAGAAATAATAAAG
GTTGTAGTCCACTTGAGGCCCCCGTGCGAAGCTCTTCGTCTGGTCAAAAG
ATGCAAAT
back to top