CN182404

Overview
NameCN182404
Unique NameCN182404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2646 contig Csv1_Contig2646:765..1565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB2_GOSHI (V-type proton ATPase subunit B 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.939e-71
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQYYSRDAAN
Sbjct:  246 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAAN 386          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.637e-70
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD  N
Sbjct:  347 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDTTN 487          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.444e-70
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRDA +
Sbjct:  343 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDATH 483          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.875e-70
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLD +YSRDAA+
Sbjct:  348 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAFYSRDAAH 488          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.495e-69
Identity = 129/141 (91.49%), Postives = 135/141 (95.74%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD+ +
Sbjct:  347 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 487          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 6.495e-69
Identity = 129/141 (91.49%), Postives = 135/141 (95.74%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD+ +
Sbjct:  346 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 486          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.483e-69
Identity = 130/141 (92.20%), Postives = 133/141 (94.33%), Query Frame = -2
Query:  374 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTRRDH+DVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK V QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KT DQYYSRDA N
Sbjct:  348 GYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKVVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTHDQYYSRDAGN 488          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.511e-60
Identity = 115/137 (83.94%), Postives = 124/137 (90.51%), Query Frame = -2
Query:  386 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DHS+VSNQLYANYAIGKDV AMKAVVGEEALSSEDLLYLEFLDKFERKFV QG Y++R IF SLDLAWTLLR+FP+ELL RI  KTL++ Y R
Sbjct:  353 GYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSEVSNQLYANYAIGKDVAAMKAVVGEEALSSEDLLYLEFLDKFERKFVNQGHYEARTIFDSLDLAWTLLRLFPKELLRRITAKTLEKMYER 489          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB2_PONAB (V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.315e-58
Identity = 108/140 (77.14%), Postives = 125/140 (89.29%), Query Frame = -2
Query:  377 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVGEEAL+S+DLLYLEFL KFER F+AQG Y++R +F++LD+ W LLRIFP+E+L RIP  TL ++Y RD+A
Sbjct:  370 GYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSA 509          
BLAST of CN182404 vs. ExPASy Swiss-Prot
Match: VATB2_HUMAN (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.315e-58
Identity = 108/140 (77.14%), Postives = 125/140 (89.29%), Query Frame = -2
Query:  377 GYITEGQIYMTGQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 796
            GYITEGQIY+  QL NRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYA YAIGKDVQAMKAVVGEEAL+S+DLLYLEFL KFER F+AQG Y++R +F++LD+ W LLRIFP+E+L RIP  TL ++Y RD+A
Sbjct:  370 GYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSA 509          
The following BLAST results are available for this feature:
BLAST of CN182404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
VATB2_GOSHI6.939e-7194.33V-type proton ATPase subunit B 2 (Fragment) OS=Gos... [more]
VATB2_ARATH2.637e-7093.62V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB2_HORVU3.444e-7093.62V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB1_HORVU5.875e-7093.62V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB3_ARATH6.495e-6991.49V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB1_ARATH6.495e-6991.49V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB1_GOSHI8.483e-6992.20V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB1_ACEAT5.511e-6083.94V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB2_PONAB2.315e-5877.14V-type proton ATPase subunit B, brain isoform OS=P... [more]
VATB2_HUMAN2.315e-5877.14V-type proton ATPase subunit B, brain isoform OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002G12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182404 ID=CN182404; Name=CN182404; organism=Citrus sinensis; type=EST; length=800bp
CTCGAAGGTTTTTTTCCCTCTCAAGGAAAAGTCCAACAAAGACAGAATTA
CAGGATAAATAGAATAATCATCAAACTTGGGCATTATAATCCTCACTACC
ATGGTTTCAATTTTGAGAAAAAGTATCCAGACCACACTAATAAATAGAAG
ATACAGGAATTACAAGATCTAAAAAGCACTCCGCTGAAAGAATATTTGCA
TCTTTTGACCAGACGAAGAGCTTCGCACGGGGGCCTCAAGTGGACTACAA
CCTTTATTATTTCTGCTCAACGGAGAAATGCAACCTATATCAAAAAGCTG
GTGAATAAACAAATTGTAGACAAAACCAATGAGGCAGCAAGGTACATGTC
AGTACGAGAGGGCTTCTTCATCAATTAGCTGCATCACGGCTGTAGTACTG
GTCAAGGGTCTTTCCTGGTATACGGTGGAGAAGCTCACGAGGAAAGATGC
GAAGAAGTGTCCATGCCAGATCAAGAGATTGGAAGATATTCCTAGAGTCA
TAAGCTCCTTGAGCAACAAATTTTCTCTCAAACTTGTCCAGGAACTCTAA
GTACAGCAGATCCTCAGAAGAAAGTGCTTCTTCTCCGACCACAGCCTTCA
TTGCCTGGACATCCTTCCCAATGGCATAATTTGCATACAGCTGGTTGGAA
ACATCGGAATGGTCCCTACGAGTCATCCCCTCACCAATAGCACTCTTCAT
CAGACGAGATAGGGACGGAAGGACATTGATCGGAGGATATATCTGTCTGT
TCTGGAGCTGCCCTGTCATGTAAATCTGCCCCTCGGTGATATATCCCCCT
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