CN182371

Overview
NameCN182371
Unique NameCN182371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:705..1324. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 6.288e-86
Identity = 161/174 (92.53%), Postives = 162/174 (93.10%), Query Frame = -1
Query:   99 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 620
            GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAP+GISDWNSIFWIAHPGGPAILDQV           KATRQVLSEYGNMSSACVLFILDEMRKKS EEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  218 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 4.663e-81
Identity = 150/174 (86.21%), Postives = 155/174 (89.08%), Query Frame = -1
Query:   99 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 620
            GAAAVIVGADPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQV           +ATRQVLSEYGNMSSACVLFILDEMRK  AEE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  220 GAAAVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.772e-80
Identity = 149/174 (85.63%), Postives = 155/174 (89.08%), Query Frame = -1
Query:   99 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 620
            GAAAVIVGADP+ S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQV           +ATRQVLSEYGNMSSACVLFILDEMRKK AEE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  220 GAAAVIVGADPNESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.023e-80
Identity = 149/174 (85.63%), Postives = 154/174 (88.51%), Query Frame = -1
Query:   99 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 620
            GAAAVIVGADPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRKK AEE  ATTGEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  220 GAAAVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.149e-79
Identity = 145/171 (84.80%), Postives = 154/171 (90.06%), Query Frame = -1
Query:  108 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 620
            GAAAVI+G+DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQV           +ATRQVLS+YGNMSSACVLFILDEMRKKS EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  223 GAAAVILGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.149e-79
Identity = 145/171 (84.80%), Postives = 154/171 (90.06%), Query Frame = -1
Query:  108 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 620
            GAAAVIVG+DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQV           +ATRQVLS+YGNMSSACVLFILDEMRKKS EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  222 GAAAVIVGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 2.829e-78
Identity = 142/172 (82.56%), Postives = 154/172 (89.53%), Query Frame = -1
Query:  105 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 620
            GAAAVIVGADPDTSVERPL++L+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPG+ISKNIEKSL+EAFAP+GISDWNS+FWIAHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMR+ S E  K TTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  218 GAAAVIVGADPDTSVERPLFELISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLAEAFAPLGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPV 389          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.231e-78
Identity = 141/174 (81.03%), Postives = 155/174 (89.08%), Query Frame = -1
Query:   99 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 620
            GAAAVIVG+DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF P+GISDWNSIFW+AHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRK+SAE+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  221 GAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.231e-78
Identity = 141/174 (81.03%), Postives = 155/174 (89.08%), Query Frame = -1
Query:   99 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 620
            GAAAVIVG+DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF P+GISDWNSIFW+AHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRK+SAE+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  221 GAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CN182371 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.834e-77
Identity = 143/172 (83.14%), Postives = 154/172 (89.53%), Query Frame = -1
Query:  105 GAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 620
            GAAAVIVGADPD  VERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF P+GI+D+NSIFW+AHPGGPAILDQV           +ATR VLSEYGNMSSACVLFILDEMRK+SAE+ +ATTGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  222 GAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
The following BLAST results are available for this feature:
BLAST of CN182371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_CITSI6.288e-8692.53Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS1_RUTGR4.663e-8186.21Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS2_RUTGR1.772e-8085.63Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS3_RUTGR3.023e-8085.63Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_PETCR1.149e-7984.80Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_DAUCA1.149e-7984.80Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHSY_BETVE2.829e-7882.56Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSY_ORYSJ8.231e-7881.03Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI8.231e-7881.03Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS4_SORBI1.834e-7783.14Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002F16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182371 ID=CN182371; Name=CN182371; organism=Citrus sinensis; type=EST; length=620bp
AAACTAAACCTTCACACGATCAACCAATAATTCAAGAGTGAAAGCATACA
ACATAAAGTTACTGAACTACTAAACATACTGATGGAGTTCTCACTTCAAG
CTTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGGTGAGCCCCGGC
CCGAACCCGAACAGCACACCCCAATCTAGCCCTTCGCCGGTGGTGGCTTT
CGCTTCCTCAGCAGACTTCTTTCTCATCTCGTCAAGGATGAACAGGACAC
AAGCGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCCTTC
AGCTTCTCCTCTTTGAGGCCGAGTTTAGACTCCACTTGGTCCAGAATTGC
GGGCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCAGTCGCTGATGC
CAACCGGGGCGAACGCTTCCGACAGGCTTTTCTCTATATTCTTTGAGATC
AAGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCGCAA
GTGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAGTCG
ACACAAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGCACCC
ACGATCACAGCAGCAGCACC
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