EY666139

Overview
NameEY666139
Unique NameEY666139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:1153..1687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.912e-38
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 252
            RKW          K LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          

HSP 2 Score: 67.781 bits (164), Expect = 3.912e-38
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 2
Query:  287 GGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 397
            GG+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 4.228e-37
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 252
            RKW          K LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI  G F+G
Sbjct:  356 RKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 67.0106 bits (162), Expect = 4.228e-37
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 2
Query:  290 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 403
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.586e-36
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 252
            RKW          K LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG
Sbjct:  349 RKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          

HSP 2 Score: 66.2402 bits (160), Expect = 1.586e-36
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:  290 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 400
            G+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.066e-36
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 252
            RK+          K LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI  G FYG
Sbjct:  358 RKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 71.633 bits (174), Expect = 2.066e-36
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2
Query:  290 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 397
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.568e-36
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 252
            RKW          K LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct:  348 RKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          

HSP 2 Score: 65.0846 bits (157), Expect = 4.568e-36
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2
Query:  290 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 400
            GK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.384e-27
Identity = 58/80 (72.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 252
            RKW          K LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct:  358 RKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.697e-25
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 252
            RKW          K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYG
Sbjct:  345 RKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 249
            RKW          K LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct:  360 RKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.748e-24
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 246
            RKW          K LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct:  358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY666139 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 5.086e-24
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   13 RKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 249
            R+W          + LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct:  354 RRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
The following BLAST results are available for this feature:
BLAST of EY666139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA1_LARTR3.912e-3867.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL4.228e-3763.75Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.586e-3663.75Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.066e-3663.75Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU4.568e-3662.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO8.384e-2772.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.697e-2567.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU3.522e-2568.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.748e-2467.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE5.086e-2465.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-014-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666139 ID=EY666139; Name=EY666139; organism=Citrus sinensis; type=EST; length=535bp
CCACGCGTCCGGAGGAAGTGGATCTCTGGTGTTGGTGTTGGAAGCATTGG
CAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAA
GGATGACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCAAGAG
CAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTGAGGC
CGCTCTTGGTGAAGCTAATGAAGATGCTATTCAGAGTGGAAATTTCTATG
GTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGCAAAGCAGC
CCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACTGCAG
AAAACTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACACG
CTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCTTAGGAT
GTGAGATATTCAAATAATATTGTTGCATTTTCATTTCTTTTTTANAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG
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