CN182337

Overview
NameCN182337
Unique NameCN182337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6364 contig Csv1_Contig6364:15..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182337 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.706e-50
Identity = 101/179 (56.42%), Postives = 122/179 (68.16%), Query Frame = -1
Query:  236 IADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEG--------EVNDSDCGTAAHTDNELVSFSNDDDSALISEH 748
            + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM RNKGQFTS+K  +G A      QD  QDD+  E SCTHCGISSK TPMMRRGPSGPR+LCNACGLFWAN+G LRDL KK E+  L   +  +G         +N        HT   +VS +N D+S L+ +H
Sbjct:  134 VVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDG-AYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAANNLNTEAASVEEHT--SMVSLANGDNSNLLGDH 309          
BLAST of CN182337 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.164e-37
Identity = 81/140 (57.86%), Postives = 95/140 (67.86%), Query Frame = -1
Query:  377 PHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK----KCEGGALGWSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 766
            PH    ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK    +       W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNACGL WANKGA RDL K
Sbjct:  126 PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSK 265          
BLAST of CN182337 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 8.222e-37
Identity = 81/140 (57.86%), Postives = 94/140 (67.14%), Query Frame = -1
Query:  377 PHSQR---GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC--EGGALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 766
            PH      G++  P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK    + G+ G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL WANKG LRDL K
Sbjct:  122 PHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261          
The following BLAST results are available for this feature:
BLAST of CN182337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT26_ARATH1.706e-5056.42GATA transcription factor 26 OS=Arabidopsis thalia... [more]
GAT25_ARATH2.164e-3757.86GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH8.222e-3757.86GATA transcription factor 27 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002E19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182337 ID=CN182337; Name=CN182337; organism=Citrus sinensis; type=EST; length=781bp
CTTTTTAAAAAACTTACCAACATATCTACTAATTGAAGCTTCATGTGATA
CATTTGAAGTTCCTTTTTGAGGTGATCTCAAGCACAAGTAACAATGATTA
GAGTGAGACAACCTCATATATTGAAGGGACTATAATATCTGTACATATAA
GACAAGCTAAAGGAAATTACTAGAAAACCTTATACTTGAATGATGGTAGC
CGGACCACTCTAACCATATAGGAAGAAAGGACTTAGTGCTCGGATATTAA
AGCTGAATCATCATCATTCGAGAAAGAAACTAGTTCGTTGTCTGTATGAG
CGGCAGTTCCACAGTCCGAGTCATTCACTTCACCTTCACCCTGCTCAGCT
GGAGTAAGAGGTTGGTCCTCCATTTTCTTTCCGAGATCCCTTAAAGCACC
CTTGTTTGCCCAAAAAAGACCACAGGCATTACAGAGGGATCTTGGCCCAG
AAGGACCACGTCGCATCATTGGCGTAGACTTCGAACTAATGCCACAATGT
GTACACGAGGTTTCTGATGGGCTGTCGTCTTGTCCTGGATCCTGGGCATT
ACTCCAACCAAGAGCTCCCCCTTCACACTTCTTGGCTGAAGTAAATTGAC
CTTTGTTCCGCTGCATCCTGAGAGCAACCTCTTGCCGGACACTGTATCTA
ACTTTCTTATCAAAGCAACGCTCTTTCCTCTTCTGCCGAAACCTATCTAA
TGAAGCTGCTCTTTGTGGTTGGGTACATTTAGCAGGATAGTCCGCAATAC
CCCTCTGGCTGTGAGGAATTACTTCCATGCC
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