CN182333

Overview
NameCN182333
Unique NameCN182333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182333_ssr728 microsatellite CN182333_ssr728:728..739. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2320 contig Csv1_Contig2320:1..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBP14_ARATH (Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.137e-47
Identity = 88/126 (69.84%), Postives = 103/126 (81.75%), Query Frame = -2
Query:  193 KNSVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPXXXXXXXXXXXXXXXAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASVDPPKEMGYLYFFERLN 570
            ++SV+TLLSFGF+E+VAR ALKASGGDIEKATDW+FNNP                QTPA +GLPDGGGKY+LFGIVSH+GTS  CGHYVAHILK+GRW IFND+KVG S DPPK+MGY+YFF+RL+
Sbjct:  673 QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNPNASVSDMDVSSSNSA-QTPAQSGLPDGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFNDDKVGISTDPPKDMGYVYFFQRLD 797          
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBP5_PONAB (Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 57/134 (42.54%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  190 KNSVETLLSFGFSEEVARNALKASGGDIEKATDWIFNN-------PXXXXXXXXXXXXXXXAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASVDPPKEMGYLYFFERLNS 570
            ++ V T++S GFS + A  AL+A+   +E+A DWIF++                          P    + DG GKY+LF  +SH+GTST CGHYV HI K+GRW I+ND KV AS  PPK++GY+YF++R+ S
Sbjct:  725 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS 858          
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBP5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-26
Identity = 57/134 (42.54%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  190 KNSVETLLSFGFSEEVARNALKASGGDIEKATDWIFNN-------PXXXXXXXXXXXXXXXAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASVDPPKEMGYLYFFERLNS 570
            ++ V T++S GFS + A  AL+A+   +E+A DWIF++                          P    + DG GKY+LF  +SH+GTST CGHYV HI K+GRW I+ND KV AS  PPK++GY+YF++R+ S
Sbjct:  725 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS 858          
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBP5_MOUSE (Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 57/134 (42.54%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  190 KNSVETLLSFGFSEEVARNALKASGGDIEKATDWIFNN-------PXXXXXXXXXXXXXXXAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASVDPPKEMGYLYFFERLNS 570
            ++ V T++S GFS + A  AL+A+   +E+A DWIF++                          P    + DG GKY+LF  +SH+GTST CGHYV HI K+GRW I+ND KV AS  PPK++GY+YF++R+ S
Sbjct:  725 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAAESISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVVS 858          
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBP13_HUMAN (Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.086e-23
Identity = 54/131 (41.22%), Postives = 74/131 (56.49%), Query Frame = -2
Query:  190 VETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPXXXXXXXXXXXXXXXAQT-------PADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASVDPPKEMGYLYFFERLNS 561
            V  + S GF    A  AL+A+  ++E+A DWIF++P               A         P    + DG G Y LF  +SH+GTST  GHY+ HI K+GRW I+ND+KV AS  PPK++GY+YF+ R+ S
Sbjct:  733 VAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS 863          
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBPA_DICDI (Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum GN=ubpA PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  199 LWYYLKNSVETLLSFGFSEEVARNALKASGGDIEKATDWIFNN--------PXXXXXXXXXXXXXXXAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASVDPPKEMGYLYFFER 585
            L+ +    V+ ++  GF++  A+ ALK + G++E+A DW+F++                          T +   + DG GKY L G +SH+G +  CGHYV HI K+ RW  FND  V  S  PPKE+GY+YF++R
Sbjct:  698 LFVFNSQDVDNIIGMGFTDSQAKLALKNTKGNLERAADWLFSHIDNLDELVAKDNASTSSINPSLIPQSTTSLQPVSDGVGKYELLGFISHLGNNVTCGHYVCHIKKNNRWIKFNDRHVQLSEQPPKELGYIYFYKR 834          
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBP14_SCHPO (Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces pombe GN=ubp14 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 49/134 (36.57%), Postives = 66/134 (49.25%), Query Frame = -2
Query:  193 KNSVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPXXXXXXXXXXXXXXXAQTPADAGLPDGGG--KYRLFGIVSHIGTSTQCGHYVAHILK--DGR--WAIFNDNKV--GASVDPPKEMGYLYFFERLN 570
            + +V++L  FGF+   AR  L  S  +IE+A DWI N+P                +               Y L  I+SH G+S   GHYVA I K  DG+  W +FND KV   AS++  K  GY+Y FERL+
Sbjct:  642 EENVQSLCEFGFTVAQARKGLLESNNNIERAVDWILNHPDESFEEPPLEGSDSSIKNENMGSWESTNVPVNYNLKAIISHKGSSAHAGHYVAFIRKEIDGKQQWVLFNDEKVLQVASLEEAKTTGYVYLFERLD 775          
BLAST of CN182333 vs. ExPASy Swiss-Prot
Match: UBP14_YEAST (Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces cerevisiae GN=UBP14 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 39/128 (30.47%), Postives = 61/128 (47.66%), Query Frame = -2
Query:  199 SVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPXXXXXXXXXXXXXXXAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK----DGRWAIFNDNKVGA--SVDPPKEMGYLYFFER 564
            S+ ++LS G +  + R AL  + GD+ ++ +W+FNN                 Q   D G       Y L  ++ H G S   GHYV  I K      +W ++ND K+ A  S++  K+ GY+YF+ R
Sbjct:  654 SLTSMLSMGLNPNLCRKALILNNGDVNRSVEWVFNNMDDDGTFPEPEVPNEEQQQKKDLGY-STAKPYALTAVICHKGNSVHSGHYVVFIRKLVADKWKWVLYNDEKLVAADSIEDMKKNGYIYFYTR 780          
The following BLAST results are available for this feature:
BLAST of CN182333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UBP14_ARATH3.137e-4769.84Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabid... [more]
UBP5_PONAB1.370e-2642.54Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo a... [more]
UBP5_HUMAN1.370e-2642.54Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sa... [more]
UBP5_MOUSE1.789e-2642.54Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus mus... [more]
UBP13_HUMAN1.086e-2341.22Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo s... [more]
UBPA_DICDI2.956e-2135.77Ubiquitin carboxyl-terminal hydrolase A OS=Dictyos... [more]
UBP14_SCHPO2.963e-1336.57Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizo... [more]
UBP14_YEAST1.626e-1130.47Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002E17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182333 ID=CN182333; Name=CN182333; organism=Citrus sinensis; type=EST; length=799bp
GCTGCCAAACAGTCAACAACAATTGTGCAGCACATCGAAAAAATTCATGC
TTGAAGCACGGGCAAGCAACTCCATGTCAAGGCTTAGAGCACAAGATTGC
TGGCTGCTGAATTCCAAGAACCATATTACCCCCATCTCTTTTTGCTGTTA
AATATTTCCCGTCTTTCATCATTCTGCCTTGCAAAATTAGCTGTTAAGCC
TTTCAAAGAAATACAAATACCCCATCTCTTTAGGTGGATCAACAGAAGCT
CCAACCTTGTTATCGTTGAAAATAGCCCATCTACCATCCTTTAAGATATG
AGCAACATAGTGGCCACATTGTGTAGAGGTTCCAATATGGCTCACTATTC
CAAAAAGCCGGTATTTCCCTCCTCCATCTGGAAGACCAGCGTCAGCTGGA
GTTTGTGCTGTGCTTGAAGTAGCAGCATCCATATCCGAGGAAGTAGAAGC
ATCAGGATTGTTAAATATCCAATCTGTTGCTTTTTCAATGTCACCACCCG
ATGCCTTCAATGCATTCCTAGCAACTTCTTCTGAGAAACCAAATGAGAGC
AAAGTCTCAACAGAATTTTTAAGATAATACCACAAAATAACTAGAATTAA
TCACTCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCA
GAGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTT
CGGACAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGA
CAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCC
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