CN182332

Overview
NameCN182332
Unique NameCN182332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182332_ssr10 microsatellite CN182332_ssr10:10..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11169 contig Csv1_Contig11169:1..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 4.368e-102
Identity = 174/207 (84.06%), Postives = 189/207 (91.30%), Query Frame = 2
Query:  170 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVND 790
            MKVIDKIQ      K  FSFEFFPPKTEDGV+NLFERMDRMVA+ P FCDITWGAGGSTADLTLDIA+RMQN +CVE+MMHLTCTNMPVEKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ++GGF CALDLV HIRS YGDYFGITVAGYPE HPD IG +G+ASNE+YQSDL YLKKK+DAGADLI+TQLFYDTD+FLKFVND
Sbjct:    1 MKVIDKIQSLADEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGSTADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGENGLASNEAYQSDLEYLKKKIDAGADLIVTQLFYDTDIFLKFVND 207          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.405e-100
Identity = 171/207 (82.61%), Postives = 188/207 (90.82%), Query Frame = 2
Query:  170 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVND 790
            MKV+DKI+      +  FSFEFFPPKTEDGVENLFERMDR+V++ P FCDITWGAGGSTADLTL+IA+RMQN ICVETMMHLTCTNMP+EKIDHAL+TI+SNGIQNVLALRGDPPHGQDKFVQ++GGFACALDLV HIRS YGDYFGITVAGYPE HPD I  DG+A+ ESYQSDL YLKKKVDAGADLI+TQLFYDTD+FLKFVND
Sbjct:    1 MKVVDKIKSVTEQGQTAFSFEFFPPKTEDGVENLFERMDRLVSYGPTFCDITWGAGGSTADLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSNGIQNVLALRGDPPHGQDKFVQVEGGFACALDLVNHIRSKYGDYFGITVAGYPEAHPDVIEADGLATPESYQSDLAYLKKKVDAGADLIVTQLFYDTDIFLKFVND 207          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.650e-99
Identity = 169/207 (81.64%), Postives = 188/207 (90.82%), Query Frame = 2
Query:  170 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVND 790
            MKVI+KI E     +  FSFE+FPPKTE+GVENLFERMDRMVAH P+FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKIDHAL+TIKSNGIQNVLALRGDPPHGQDKFVQ++GGFACALDLV+HIR+ YGDYFGITVAGYPE HPD I  +G A+ E+Y +DL YLK+KVDAGADLI+TQLFYDTD+FLKFVND
Sbjct:    1 MKVIEKILEAAGDGRTAFSFEYFPPKTEEGVENLFERMDRMVAHGPSFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDHALETIKSNGIQNVLALRGDPPHGQDKFVQVEGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQGEGGATLEAYSNDLAYLKRKVDAGADLIVTQLFYDTDIFLKFVND 207          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 3.239e-97
Identity = 169/207 (81.64%), Postives = 185/207 (89.37%), Query Frame = 2
Query:  170 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVND 790
            MKVI+KIQE  A  + VFSFE+FPPKTE+G++NLFERMDRMVAH P FCDITWGAGGSTADLTL+IANRMQN +CVETMMHLTCTNMPVEKID AL TIKSNGIQNVLALRGDPPHGQDKFVQ+ GGFACALDLV+HIR+ YGDYFGITVAGYPE HPD I     A+ E+Y +DL YLK+KVDAGADLIITQLFYDTD+FLKFVND
Sbjct:    1 MKVIEKIQEAAADGRTVFSFEYFPPKTEEGLDNLFERMDRMVAHGPNFCDITWGAGGSTADLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQVAGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLKQKVDAGADLIITQLFYDTDIFLKFVND 207          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.206e-51
Identity = 103/207 (49.76%), Postives = 138/207 (66.67%), Query Frame = 2
Query:  170 MKVIDKI-QEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMV-AHNPAFCDITWGAGGST-ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKF 781
            MK+ +K+ Q +  S K  +SFE+F PKT  GV+NL++RMDRM  A  P F DITW AGG   + L+ D+    Q+ + +ET MHLTCTNMP+  ID AL+    +G QN+LALRGDPP   + +  ++GGF  A DL+K+I+S YGD+F I VAGYPE HP+         N+  + DL YLK+K+DAG D IITQ+FYD D F+ +
Sbjct:    1 MKITEKLEQHRQTSGKPTYSFEYFVPKTTQGVQNLYDRMDRMYEASLPQFIDITWNAGGGRLSHLSTDLVATAQSVLGLETCMHLTCTNMPISMIDDALENAYHSGCQNILALRGDPPRDAENWTPVEGGFQYAKDLIKYIKSKYGDHFAIGVAGYPECHPE-------LPNKDVKLDLEYLKQKIDAGGDFIITQMFYDVDNFINW 200          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.399e-46
Identity = 99/207 (47.83%), Postives = 132/207 (63.77%), Query Frame = 2
Query:  170 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHN-PAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVN 787
            MK+ DK+      +KV +S+EFFPPKT  GV+NL+ R+DRM     P F D+TWGAGG++++LT  I N +Q    V+T MHLTCTNM  E ID AL+     G +N+LALRGDP    D + + + GF  A DLV++IR+ Y D F I VAGYPEG+     PD     +     + +LK KVD GAD I+TQ+FYD D F+ +V+
Sbjct:    1 MKISDKLLHPDWKEKVTYSYEFFPPKTSTGVQNLYNRIDRMKTWGRPMFVDVTWGAGGTSSELTPGIVNVIQTDFEVDTCMHLTCTNMSTEMIDAALKRAHETGCRNILALRGDPVKDTD-WTEGESGFRYASDLVRYIRTHYNDEFCIGVAGYPEGY----SPD-----DDIDESIKHLKLKVDEGADFIVTQMFYDVDNFIAWVD 197          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR1_YEAST (Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.908e-45
Identity = 95/188 (50.53%), Postives = 122/188 (64.89%), Query Frame = 2
Query:  224 SFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD--KFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKF 781
            S EFFPPKTE G  NL ERM RM A +P F  +TWGAGG+TA+ TL +A+  Q T+ +   MHLTCTN     ID AL    + GI+N+LALRGDPP G+D       +  F  A+DLV++I+ +YGD F + VA YPEGH +    +     +    DL+YLK+KV+AGAD +ITQLFYD + FL F
Sbjct:   16 SLEFFPPKTELGTRNLMERMHRMTALDPLFITVTWGAGGTTAEKTLTLASLAQQTLNIPVCMHLTCTNTEKAIIDDALDRCYNAGIRNILALRGDPPIGEDWLDSQSNESPFKYAVDLVRYIKQSYGDKFCVGVAAYPEGHCE---GEAEGHEQDPLKDLVYLKEKVEAGADFVITQLFYDVEKFLTF 200          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR2_SCHPO (Methylenetetrahydrofolate reductase 2 OS=Schizosaccharomyces pombe GN=met11 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.182e-44
Identity = 94/207 (45.41%), Postives = 134/207 (64.73%), Query Frame = 2
Query:  170 MKVIDKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHN-PAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVN 787
            MK++D I +K+ +    +SFE+FPPKT  G+ENL  R+ RM  +  P F  +TWG  GSTA++++ +A  ++    +   +HLTCTN+    ID AL+T K  GI+N+LALRGDPP   D +      F  A+DLV++IR  YGDYF I VA YPEGH D+  P+    ++    D+ +L +KV+AGAD IITQ+FY+ + F+KF N
Sbjct:    1 MKIVDLI-DKIPNGNAFYSFEYFPPKTTVGLENLSSRITRMSRNMMPLFSSVTWGTAGSTAEVSIYLAKMLEQHHKIPACLHLTCTNVDKAIIDKALETAKEYGIRNILALRGDPPLNSDHWEGKVSEFEHAVDLVRYIREKYGDYFCIGVAAYPEGHVDSNVPE---LSKDPLRDIPFLIEKVEAGADFIITQIFYEPEAFIKFEN 203          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.337e-42
Identity = 91/205 (44.39%), Postives = 128/205 (62.44%), Query Frame = 2
Query:  182 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 784
            DK++ ++ S    FS EFFPP+T +G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC    +E+I   L   K  G++N++ALRGDP    D++ + +GGF  A+DLVKHIRS +GDYF + VAGYP+GHP+           S+++DL +LK+KV AGAD IITQLF++ D F +FV
Sbjct:   47 DKMRRRMESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLFIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCCQRLEEITGHLHKAKQLGLKNIMALRGDPIG--DQWEEEEGGFNYAVDLVKHIRSEFGDYFDLCVAGYPKGHPEA---------GSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFV 240          
BLAST of CN182332 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 2.280e-42
Identity = 90/205 (43.90%), Postives = 128/205 (62.44%), Query Frame = 2
Query:  182 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFV 784
            +K++ ++ S    FS EFFPP+T +G  NL  R DRM A  P + D+TW   G         ++ IA+   N   +ET++H+TC    +E+I   L   K  G++N++ALRGDP    D++ + +GGF  A+DLVKHIRS +GDYF I VAGYP+GHP+           S+++DL +LK+KV AGAD IITQLF++ D F +FV
Sbjct:   47 EKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIG--DQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEA---------GSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFV 240          
The following BLAST results are available for this feature:
BLAST of CN182332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
MTHR2_ARATH4.368e-10284.06Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH1.405e-10082.61Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR1_MAIZE2.650e-9981.64Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_ORYSJ3.239e-9781.64Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR2_YEAST1.206e-5149.76Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
MTHR1_SCHPO3.399e-4647.83Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR1_YEAST4.908e-4550.53Methylenetetrahydrofolate reductase 1 OS=Saccharom... [more]
MTHR2_SCHPO3.182e-4445.41Methylenetetrahydrofolate reductase 2 OS=Schizosac... [more]
MTHR_MACFA1.337e-4244.39Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_HUMAN2.280e-4243.90Methylenetetrahydrofolate reductase OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0002E15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182332 ID=CN182332; Name=CN182332; organism=Citrus sinensis; type=EST; length=792bp
GAGGCACACCCTCACCTCACCTCACACACCCACTCTCTTTTACTTTCATC
TCGCATCCATTCTTTCCATTTTTCTTTTTCATAAATCACCCTCGCAGATC
TGAACTCAACCGACAACTCACTCGTAAACGACCTGTCGGTGGCAGCAGTA
GCTACTCTCCGAACCAAAAATGAAGGTAATAGACAAGATTCAAGAGAAAG
TAGCCTCCGACAAGGTCGTCTTCTCCTTCGAATTCTTCCCGCCGAAGACG
GAAGATGGCGTGGAGAACTTGTTCGAGCGGATGGACCGCATGGTGGCCCA
CAACCCGGCATTCTGCGACATCACGTGGGGGGCGGGTGGCTCCACGGCCG
ATCTGACTCTCGACATCGCGAACAGGATGCAGAACACGATATGCGTCGAG
ACGATGATGCATTTGACGTGCACGAACATGCCCGTCGAGAAGATCGATCA
CGCTCTTCAGACTATTAAGTCCAACGGCATCCAGAACGTTCTCGCTCTTC
GCGGCGATCCTCCTCACGGTCAGGATAAGTTCGTTCAGATCCAGGGTGGC
TTCGCCTGCGCTCTTGATCTCGTGAAACATATTAGGTCTGCTTATGGTGA
TTACTTTGGCATCACTGTTGCTGGTTACCCAGAGGGACATCCGGATACCA
TTGGACCTGATGGCGTGGCCAGTAATGAATCATATCAAAGTGATCTTCTT
TATCTGAAGAAAAAGGTGGATGCTGGTGCAGATCTAATTATCACTCAACT
ATTCTATGATACTGACATGTTTCTTAAGTTTGTGAATGACTG
back to top