CN182329
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.010e-24 Identity = 57/97 (58.76%), Postives = 65/97 (67.01%), Query Frame = -3 Query: 255 MASEEESAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLRTA 545 M EE V+EPLDLIR SLDERI+VK+R DRELRGKLHAYDQHLNMIL +R +R + LFVRGDGVIL+SPPLRT+ Sbjct: 1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24 Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = -3 Query: 261 SAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLR 527 + V+EPLDLIR SLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24 Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = -3 Query: 261 SAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLR 527 + V+EPLDLIR SLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24 Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = -3 Query: 261 SAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLR 527 + V+EPLDLIR SLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19 Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = -3 Query: 267 EEESAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPP 536 E AV EPLDL+R SLDE +YVKLR DREL G+LHAYD+HLNM+LG ++T R+ LFVRGD VIL++PP Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91 The following BLAST results are available for this feature:
BLAST of CN182329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN182329 ID=CN182329; Name=CN182329; organism=Citrus sinensis; type=EST; length=577bpback to top |