CN182329

Overview
NameCN182329
Unique NameCN182329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2804 contig Csv1_Contig2804:119..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.010e-24
Identity = 57/97 (58.76%), Postives = 65/97 (67.01%), Query Frame = -3
Query:  255 MASEEESAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLRTA 545
            M   EE  V+EPLDLIR SLDERI+VK+R DRELRGKLHAYDQHLNMIL                    +R  +R +  LFVRGDGVIL+SPPLRT+
Sbjct:    1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97          
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  261 SAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLR 527
            + V+EPLDLIR SLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  261 SAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLR 527
            + V+EPLDLIR SLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  261 SAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPPLR 527
            + V+EPLDLIR SLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CN182329 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  267 EEESAVKEPLDLIRFSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXVRTTRRTVPFLFVRGDGVILVSPP 536
            E   AV EPLDL+R SLDE +YVKLR DREL G+LHAYD+HLNM+LG                   ++T R+    LFVRGD VIL++PP
Sbjct:    2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91          
The following BLAST results are available for this feature:
BLAST of CN182329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_DICDI2.010e-2458.76Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_MOUSE2.625e-2460.67U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN2.625e-2460.67U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN2.625e-2460.67U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_SCHPO3.321e-1952.22Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0002E14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182329 ID=CN182329; Name=CN182329; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTGAGGAAAGCTATGTTCATACAACAAAAGCTGAT
CCGTAAGTTTCTAATTGACAAGATTCTAACTTAATACAAATTCAAGGCCC
GCCGTAACAACATGTGATATTTCATGATTGCCAACTTAGCATGTAATCAG
TTTGAGATGTTAAACTAGGAAATGCAAAAACAGTGACAGAAAGAAAAGCA
TTAATGTAAAATTGGGGGTTTCTTCATCGAGTGTGCACCCTGTTCTTCGA
TTTAAGCTGTCCTCAGTGGAGGAGAAACTAGGATGACACCATCCCCTCTT
ACAAAGAGAAACGGAACAGTACGCCTTGTAGTCCGAACAATCTCTTCATA
AGTTTCATCATCGATTTCCACTGTAGTAACAACTTCTTCGACGTCCCCAA
GAATCATGTTTAAATGTTGATCATATGCATGGAGTTTGCCGCGGAGTTCA
CGGTCGGATCGGAGCTTAACGTAAATGCGCTCGTCGAGGCTGAATCTTAT
GAGATCCAACGGCTCCTTCACTGCGCTTTCTTCTTCGCTTGCCATTCTTG
CTCAGTTGCTCTCCCTCGCTCTCTCCT
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