CN188982

Overview
NameCN188982
Unique NameCN188982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188982 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.892e-68
Identity = 122/255 (47.84%), Postives = 177/255 (69.41%), Query Frame = 1
Query:    1 EGEMELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDDIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDKIKEIFTRINDFQKVNSI--PLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSDLDVWPYLANLTSDVISRTAFGSSYEEGRRIFQLQAELAELTMQVFRSVHIPGWRFLP 759
            E +M+   K+IA TI  + V+ WAWRVL+W W  PK++EK LRQQG +GN YR L GD+KE+    +EA ++P+  ++DI  R+ P ++  +N YG+NSF W G  PR+++M P+ IKE+ T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS ++D++P    LTSDVIS+ AFGS+YEEG +IF+L  EL +LT+   R V+IPGW +LP
Sbjct:    2 EMDMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVISKVAFGSTYEEGGKIFRLLKELMDLTIDCMRDVYIPGWSYLP 255          
BLAST of CN188982 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  262 LHKLVNDYGKNSFMWFGP-TPRVNIMNPDKIKEIFTR---INDFQKVNSIPLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSDLDVWPYLANLTSDVISRT--AFGSSYEEG-----RRIFQLQAELAELTMQVFR 726
            L +LV  Y +    W GP TP +N+ +PD ++ +      I D   V    L   L  GL    G+KW  HR+L+ PAFH   LK  +  F  S   +  KW++ +++EGS+ LDV+ +++ +T D + +   +F S+ +E        I +L A + +   Q FR
Sbjct:   77 LTQLVATYPQGFVRWLGPITPIINLCHPDIVRSVINTSDAITDKDIVFYKTLKPWLGDGLLLSVGDKWRHHRRLLTPAFHFNILKPYIKIFSKSANIMHAKWQR-LAMEGSTCLDVFEHISLMTLDSLQKCIFSFDSNCQEKPSEYITAIMELSALVVKRNNQFFR 241          
BLAST of CN188982 vs. ExPASy Swiss-Prot
Match: CP4C1_BLADI (Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP4C1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 47/150 (31.33%), Postives = 69/150 (46.00%), Query Frame = 1
Query:  283 YGKNSFMWFGPTPRVNIMNPDKIKEIFTRINDFQKVNSIPLAR-LLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSDLDVWPYLANLTSDVISRTAFG----SSYEEGRRIFQLQAELAELTMQ 717
            YG    +W GP  +V +  P+ ++ I        K       R  L  GL T  G KW  HRK+I P FH + L + +  F +   EI+ K  K  S  G  D D++P++ +   D+I  TA G    +  E      +   E++ELTMQ
Sbjct:   70 YGPLYRIWAGPIAQVGLTRPEHVELILRDTKHIDKSLVYSFIRPWLGEGLLTGTGAKWHSHRKMITPTFHFKILDIFVDVF-VEKSEILVK--KLQSKVGGKDFDIYPFITHCALDIICETAMGIQMNAQEESESEYVKAVYEISELTMQ 216          
The following BLAST results are available for this feature:
BLAST of CN188982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C72A1_CATRO3.892e-6847.84Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4F8_HUMAN1.963e-1131.33Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
CP4C1_BLADI7.460e-1131.33Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188982 ID=CN188982; Name=CN188982; organism=Citrus sinensis; type=EST; length=759bp
GAGGGTGAAATGGAGTTGCCTCTGAAATCCATAGCTTTGACCATTGTTAT
TGTAACGGTGCTAACATGGGCATGGAGAGTGCTGAACTGGGTGTGGCTGA
GGCCCAAGAAGCTGGAGAAATTCCTGAGACAGCAAGGTTTAAAAGGCAAT
TCTTACAGGCTTCTGTTTGGTGACTTGAAAGAAAATTCCATCGAGTTGAA
GGAAGCAAAAGCCAGACCCCTCAGTTTGGATGACGATATTGCTATTCGTG
TCAATCCATTCCTTCATAAACTGGTAAATGATTATGGTAAGAATTCTTTC
ATGTGGTTTGGTCCGACACCAAGGGTGAATATTATGAATCCTGATAAAAT
AAAAGAGATATTTACCAGGATCAATGATTTTCAAAAAGTCAATTCAATCC
CACTTGCCAGGCTGCTGATAGTTGGATTGGCTACCCTTGAGGGGGAGAAG
TGGGCTAAACATAGAAAACTCATCAACCCAGCCTTCCACCAAGAGAAGCT
CAAGCTTATGTTGCCAGCATTCTACTTGAGTTGTATCGAAATAATTACAA
AGTGGGAGAAGCAAATGTCTGTAGAAGGATCATCTGACTTGGATGTATGG
CCTTATCTTGCAAATTTGACAAGTGATGTGATTTCTCGAACGGCTTTTGG
GAGTAGTTATGAAGAAGGAAGAAGGATTTTTCAGCTCCAGGCAGAGCTAG
CTGAACTCACAATGCAAGTCTTTCGTTCAGTTCACATTCCAGGATGGAGG
TTTTTACCT
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