CN182300

Overview
NameCN182300
Unique NameCN182300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:535..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44
Identity = 80/83 (96.39%), Postives = 83/83 (100.00%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            KI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  156 KIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 4.790e-44
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            KI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:  156 KIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            KI+PSGCRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  156 KIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.105e-43
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            KI+PSGCR MIGQVAGGGRTEKP+LKAGNAYHK+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:  156 KIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.130e-38
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            KI+PS CRAMIGQVAGGGRTEKP LKAGNAYHK++ KRNCWP VRGVAMNPVEHPHGGGNHQHIGHASTVRRD   G KVG I
Sbjct:  157 KILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQI 239          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.801e-36
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K++PS  RAMIG VAGGGR +KP+LKAG AYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  156 KVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K++PS  RAM+G VAGGGR +KP+LKAG AY K++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  156 KVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 5.869e-34
Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K++PS  R ++G VAGGGR +KPLLKAG A+HK+RVKRNCWP+ RGVAMNPV+HPHGGGNHQH+GH++TV R + PGQKVGLI
Sbjct:  155 KVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K++ S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:  156 KVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238          
BLAST of CN182300 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = -3
Query:  308 KIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 556
            K+I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  156 KVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
The following BLAST results are available for this feature:
BLAST of CN182300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL8_SOLLC1.646e-4496.3960S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH4.790e-4495.1860S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL81_ARATH2.377e-4395.1860S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_TOBAC3.105e-4393.9860S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL82_ARATH5.130e-3885.5460S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_ANOGA4.801e-3680.7260S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL5.308e-3578.3160S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL2_SCHPO5.869e-3472.2960S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_CAEEL7.665e-3478.3160S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL8_XENTR4.968e-3374.7060S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182300 ID=CN182300; Name=CN182300; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTACCTAATTCGATGAAGGCATCCATTAATATATC
CAAAAATATCAAAATCAACTAAAGTTTTGGATAAGAGCAAATTAAGCTAA
ACTTTAAGCCAACATAATTTAACATCAGGATCATCCCAGAGATCCAAATC
TGAACAAATTTTTCCAAGGTAATGATGCAGCAGGAAAAGTAAAATGACAG
ATCGCGATAGAGAGACGATTTGTGGTAACACAAAGGATTTAAGCCTTGTC
GGCCTTGGCTGCAGTGGCAGCAGCTTGTCCTCTGAGCCGACCAGTCCTCC
TGGCTGCAATAAGACCAACCTTCTGGCCAGGGGGAGCATCACGCCTAACA
GTGCTAGCATGACCAATGTGCTGGTGGTTACCTCCTCCATGAGGATGCTC
CACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTTCGCTTCA
CTCTGAATTTGTGGTATGCATTACCAGCTTTGAGAAGGGGCTTCTCAGTC
CTCCCTCCGCCGGCAACCTGCCCAATCATAGCTCTGCAGCCACTTGGAAT
AATCTTTT
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