CN188976

Overview
NameCN188976
Unique NameCN188976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:29..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.905e-54
Identity = 86/137 (62.77%), Postives = 101/137 (73.72%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ G+ CGACF+I+C ND +WC PGSI VTAT+FC          GGWCNPPQQHFDLSQP  ++IAQY+AGIVPV+YRRVPC R GGIRFTINGHSYFNLVLITNV GAGDV +  +KG
Sbjct:   53 LYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKG 189          

HSP 2 Score: 41.9726 bits (97), Expect = 2.905e-54
Identity = 18/36 (50.00%), Postives = 20/36 (55.56%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G GW +AHATFY              YGNLYS+GYG
Sbjct:   24 GGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYG 59          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.094e-53
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ G+ CG+CF+I+C ND +WC PGSI VTAT+FC          GGWCNPP +HFDL+QP  ++IAQY+AGIVPVSYRRVPC R GGIRFTINGHSYFNLVLITNV GAGDV + +IKG
Sbjct:   52 LYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKG 188          

HSP 2 Score: 44.2838 bits (103), Expect = 1.094e-53
Identity = 19/37 (51.35%), Postives = 21/37 (56.76%), Query Frame = 3
Query:  108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            YG GW +AHATFY              YGNLYS+GYG
Sbjct:   22 YGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYG 58          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 3.158e-53
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ G+ CGACF+IKC +D  WC PG+I VTAT+FC          GGWCNPP  HFDLSQP  ++IAQYKAG+VPVSYRRVPC R GGIRFTINGHSYFNLVL+TNV GAGDV +V++KG
Sbjct:   56 LYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKG 192          

HSP 2 Score: 42.3578 bits (98), Expect = 3.158e-53
Identity = 18/37 (48.65%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            Y  GW +AHATFY              YGNLYS+GYG
Sbjct:   26 YDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYG 62          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.337e-51
Identity = 85/137 (62.04%), Postives = 97/137 (70.80%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ G  CGACF IKCV+DP+WC  G+I VT T+FC          GGWCNPPQ HFDL+QP   +IAQYKAG+VPV YRRV C R GGIRFTINGHSYFNLVLITNV GAGDV +VSIKG
Sbjct:   55 LYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKG 191          

HSP 2 Score: 40.0466 bits (92), Expect = 6.337e-51
Identity = 17/37 (45.95%), Postives = 19/37 (51.35%), Query Frame = 3
Query:  108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            Y  GW +A ATFY              YGNLYS+GYG
Sbjct:   25 YSSGWVNARATFYGGADASGTMGGACGYGNLYSQGYG 61          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.108e-50
Identity = 79/122 (64.75%), Postives = 94/122 (77.05%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGACF+IKCVNDP+WC PG  S+FVTAT+FC          GGWCNPP+ HFDL+ P   +IA+Y+AGIVP+SYRRV C ++GGIRFTINGH YFNLVLITNV GAGD+   S+KG
Sbjct:   77 FNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKG 198          

HSP 2 Score: 38.5058 bits (88), Expect = 3.108e-50
Identity = 17/36 (47.22%), Postives = 18/36 (50.00%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G  W  AHATFY              YGNLYS+GYG
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYG 66          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.282e-50
Identity = 82/120 (68.33%), Postives = 96/120 (80.00%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G+ CGAC+++KC +DPRWC   +I VTAT+FC          GGWCNPP QHFDL++PA  QIAQY+AGIVPVS+RRVPC + GGIRFTINGHSYFNLVLI+NV GAGDV AVSIKG
Sbjct:   73 FNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKG 192          

HSP 2 Score: 36.1946 bits (82), Expect = 5.282e-50
Identity = 15/34 (44.12%), Postives = 16/34 (47.06%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW   HATFY              YGNLY +GYG
Sbjct:   29 GWQGGHATFYGGEDASGTMGGACGYGNLYGQGYG 62          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.883e-50
Identity = 81/139 (58.27%), Postives = 98/139 (70.50%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ GM CGACF++KC NDP+WC  GS  I +TAT+FC          GGWCNPP++HFDL+ P   +IAQY+AGIVPVSYRRVPC + GGIRFTINGH YFNLVLITNV GAGD+   S+KG
Sbjct:   57 LYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKG 195          

HSP 2 Score: 39.2762 bits (90), Expect = 6.883e-50
Identity = 17/36 (47.22%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G  W +AHATFY              YGNLYS+GYG
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYG 63          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.270e-48
Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPG--SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G+ CG+CF++KC+NDP WC PG  SI +TAT+FC          GGWCNPP++HFDL+ P    IA+YKAGIVPVSYRR+PC + GGIRFTING  YFNLVL+TNV GAGDV  VS+KG
Sbjct:   75 FNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKG 196          

HSP 2 Score: 38.5058 bits (88), Expect = 1.270e-48
Identity = 17/36 (47.22%), Postives = 19/36 (52.78%), Query Frame = 3
Query:  111 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            G  W +AHATFY              YGNLYS+GYG
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYG 64          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.270e-48
Identity = 78/120 (65.00%), Postives = 96/120 (80.00%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGACF+++C +DP WC PGSI V+AT+FC          GGWCNPP +HFDL++PA  QIAQY+AGIVPV++RRVPC + GGIRFTING+ YF+LVLITNV GAGD+RAVS+KG
Sbjct:   75 FNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKG 194          

HSP 2 Score: 35.4242 bits (80), Expect = 1.270e-48
Identity = 15/34 (44.12%), Postives = 17/34 (50.00%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW   HATFY              YGNL+S+GYG
Sbjct:   31 GWERGHATFYGGADASGTMGGACGYGNLHSQGYG 64          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.666e-48
Identity = 77/137 (56.20%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G     ++     F+ G  CG+C++++C N    C PGSI VTAT+FC          GGWCNPP+ HFD+++PA   IAQY+AGIVPVS+RRVPC + GG+RFT+NGHSYFNLVL+TNV GAGDVR+VSIKG
Sbjct:   50 LYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKG 186          

HSP 2 Score: 40.0466 bits (92), Expect = 3.666e-48
Identity = 19/37 (51.35%), Postives = 20/37 (54.05%), Query Frame = 3
Query:  108 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            YG GW  AHATFY              YGNLYS+GYG
Sbjct:   21 YG-GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYG 56          
The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA1_ARATH2.905e-5462.77Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH1.094e-5361.31Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH3.158e-5361.31Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP14_ARATH6.337e-5162.04Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP16_ARATH3.108e-5064.75Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA8_ARATH5.282e-5068.33Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ARATH6.883e-5058.27Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA9_ARATH1.270e-4863.11Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA2_ARATH1.270e-4865.00Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA4_ORYSJ3.666e-4856.20Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bp
GACGCCTCTCTTTCTCTCTTAAAAAGATACGCAAGCAAAAGGGTTTCAGG
AACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTC
ATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTG
GGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTA
TACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCGCTTTT
CACATTGGCATGATCTGTGGGGCTTGTTTTGATATCAAGTGTGTTAATGA
CCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACTGATTTTT
GCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCT
CCCCAGCAACATTTTGACCTCTCTCAGCCTGCGCTTGAACAAATTGCTCA
GTACAAAGCTGGTATAGTACCTGTGTCTTACAGAAGGGTTCCATGCACTA
GGAACGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTA
GTCCTAATCACAAACGTCCGAGGCGCTGGTGATGTGCGTGCTGTTTCAAT
CAAAGGGT
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