CN182268

Overview
NameCN182268
Unique NameCN182268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182268_ssr249 microsatellite CN182268_ssr249:249..272. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7957 contig Csv1_Contig7957:16..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNRF+APN RF+KEVTK+EDAPESEWK WNWRS GDL++NGAFFTP                A+PSSL+  +T+ +G+LNCR
Sbjct:  310 IGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCR 403          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNRF+APND   KEVTKYEDAP S+WK WNWRSEGDL +NGAFFTP                ARPSSL++S+T+ AG+L CR
Sbjct:  310 IGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAGALFCR 403          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.823e-28
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSASPTI SQGNRF+APN RFNKEVTK+EDAPES+W++WNWRSEGD+++NGA+F                  ARPSSL+ SIT  AG+L+CR
Sbjct:  311 IGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCR 404          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.300e-28
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSASPTI SQGNRF+APN RF+KEVTK+E+APESEWKNWNWRSEGDLM+NGA+F                   RPS+L++S+T  AG+L CR
Sbjct:  303 IGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCR 396          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.126e-27
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFF--TPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNRF+APN+++ KEVTK+EDAPES+W++WNWRSEGDLM+NGA+F  T                 ARPSSL+ SIT  AG +NC+
Sbjct:  304 IGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCK 399          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFT--PXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNRF+AP+D  +KEVTK+EDAPE EW+NWNWRSEGDL++NGAFFT                   ARPSS +  IT  +G+L+C+
Sbjct:  332 IGGSANPTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCK 427          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA PTINSQGNR+ AP DRF KEVTK  +   SEWK WNWRSEGDL++NGAFF P                A+PSS++ +IT+ AG+L CR
Sbjct:  372 IGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCR 465          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.969e-23
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSASPTINSQGNR++AP +RF KEVTK + A + +W++WNWRSEGDL +NGAFFT                 A+ SSL+  IT  AG+LNCR
Sbjct:  319 IGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYNAGALNCR 412          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA+PTINSQGNRF+AP +RF KEVTK   A + EW NWNWRS+GDLM+NGA+FT                 A+ SSL+  +T+ +G+L CR
Sbjct:  320 IGGSANPTINSQGNRFLAPGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSGALKCR 413          
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635
            +GGSA PTINSQGNRF+AP + F KEVTK E   ES+WK+WNWRSEGDL +NGAFFT                 A+ SSL+ ++T+ +G+LNCR
Sbjct:  318 IGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSGALNCR 411          
The following BLAST results are available for this feature:
BLAST of CN182268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PEL18_ARATH2.558e-2962.77Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH4.363e-2963.83Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL11_ARATH4.823e-2861.70Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL6.300e-2861.70Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL18_SOLLC3.126e-2759.38Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL22_ARATH4.992e-2557.29Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL15_ARATH1.897e-2456.38Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL20_ARATH7.969e-2355.32Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH1.041e-2253.19Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH1.775e-2255.32Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182268 ID=CN182268; Name=CN182268; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTTTTTTTCATTAATTGAACATTATTTATTTTTATAAAAAT
ACATAGACGTATATCAAACACTTCTTTCGGCTCTTGTTTTTCTTAACCCC
CATCACAATTCTTTACAGAATCACATAATGGTGGGTTTTATACAAACAGG
CTCCACAATCTTATATACACTTGCATGTTAGGGAAAAAAAAAAACAACAT
TAACTTACAAGAATACGAATCCTACACTTGTAATTACAATTAAACTTCTT
ATTATTATTATTATTATTATTATTTATCCTTTCATTCTTCCCTCAGCCAT
TTATTATTGGGCCCAGTTTGGGGTGGTTGGGGGCACTAGCAAGGCTTGCC
TTTCCTGCAATTAAGCGAGCCAGCTCCTGCTGTGATTGAACTTATTAGTG
AAGATGGTCTTGCTCCTAAACTTGAAGCCTTAGCATAACTAGAAGATGCG
CCGGCACCCGATGGCGTAAAAAATGCACCATTTACCATCAAATCCCCTTC
GGACCTCCAATTCCAATTCTTCCATTCACTCTCCGGCGCATCCTCATATT
TAGTCACCTCTTTGTTGAATCTATCATTTGGAGCAACAAATCTATTCCCT
TGGCTGTTAATTGTAGGAGAAGCACTCCCACCGAGCG
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