CN182268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 2.558e-29 Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNRF+APN RF+KEVTK+EDAPESEWK WNWRS GDL++NGAFFTP A+PSSL+ +T+ +G+LNCR Sbjct: 310 IGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCR 403
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29 Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNRF+APND KEVTKYEDAP S+WK WNWRSEGDL +NGAFFTP ARPSSL++S+T+ AG+L CR Sbjct: 310 IGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAGALFCR 403
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.823e-28 Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSASPTI SQGNRF+APN RFNKEVTK+EDAPES+W++WNWRSEGD+++NGA+F ARPSSL+ SIT AG+L+CR Sbjct: 311 IGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCR 404
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.300e-28 Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSASPTI SQGNRF+APN RF+KEVTK+E+APESEWKNWNWRSEGDLM+NGA+F RPS+L++S+T AG+L CR Sbjct: 303 IGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCR 396
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.126e-27 Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFF--TPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNRF+APN+++ KEVTK+EDAPES+W++WNWRSEGDLM+NGA+F T ARPSSL+ SIT AG +NC+ Sbjct: 304 IGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCK 399
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25 Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFT--PXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNRF+AP+D +KEVTK+EDAPE EW+NWNWRSEGDL++NGAFFT ARPSS + IT +G+L+C+ Sbjct: 332 IGGSANPTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCK 427
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24 Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA PTINSQGNR+ AP DRF KEVTK + SEWK WNWRSEGDL++NGAFF P A+PSS++ +IT+ AG+L CR Sbjct: 372 IGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCR 465
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.969e-23 Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSASPTINSQGNR++AP +RF KEVTK + A + +W++WNWRSEGDL +NGAFFT A+ SSL+ IT AG+LNCR Sbjct: 319 IGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYNAGALNCR 412
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22 Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA+PTINSQGNRF+AP +RF KEVTK A + EW NWNWRS+GDLM+NGA+FT A+ SSL+ +T+ +G+L CR Sbjct: 320 IGGSANPTINSQGNRFLAPGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSGALKCR 413
BLAST of CN182268 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22 Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = -3 Query: 354 LGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXXXXXARPSSLISSITAGAGSLNCR 635 +GGSA PTINSQGNRF+AP + F KEVTK E ES+WK+WNWRSEGDL +NGAFFT A+ SSL+ ++T+ +G+LNCR Sbjct: 318 IGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSGALNCR 411 The following BLAST results are available for this feature:
BLAST of CN182268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182268 ID=CN182268; Name=CN182268; organism=Citrus sinensis; type=EST; length=637bpback to top |