CN182265

Overview
NameCN182265
Unique NameCN182265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:100..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.852e-33
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT D SL +AFS +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.264e-32
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT D +L  AFS YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.113e-31
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT D +L  AF+ YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.031e-31
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT + SL  AFS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.755e-29
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT D  L   FS +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.517e-29
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT D+ L   FS +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.817e-29
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGL WAT D SL  AFS YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.731e-28
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT++ SL  AF++YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.200e-26
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = -2
Query:  408 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 638
            RCFVGGLAWAT + +L +AF+ +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CN182265 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.162e-21
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = -2
Query:  408 SSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 599
            +SLH AFS YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CN182265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
GRP1_DAUCA3.852e-3387.01Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP1_SINAL7.264e-3283.12Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH2.113e-3180.52Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL8.031e-3180.52Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP8_ARATH5.755e-2976.62Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA7.517e-2975.32Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP_HORVU9.817e-2976.62Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRPA_MAIZE3.731e-2875.32Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI1.200e-2670.13Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI1.162e-2178.13Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002C23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182265 ID=CN182265; Name=CN182265; organism=Citrus sinensis; type=EST; length=639bp
GAGGATTCATTTCATTTTTTTTTTCAAACAATTAACCAAACAGGGAGAAC
GAAACAACACAGGATAACAGGAACCGATCAAAACGACACATCATAACCCA
AGGAAAATATCAAAACACGGAACGGTAACATTCAACTCCTAATTTATCCT
ACAAAACCCTAGTTCCTCCAGCTACCGCCATCAGAAGCACCGCTCCTTGA
GTATCGGGAACCACCATCACCGCCATATCCACCGTCACGGCTGTAACCAC
CTTCACGGCGGCCACCATATCCACCGCCGCCACCTCCGTATCCGCGGCTC
CCACCGTATCCACCGCCACCACCACTTTCACGGCGTCCACCACCTCCATA
TCCACCACCGCCACGGCTTCCGTAACCGCCACCGCCACCGCCACCGCTTC
CACGGGACTGGGCCTCGTTGACTGTTATGTTACGGCCGTCCAGATTCTGG
CCGTTCATGCCTTCGATTGCGTCCCTCATCGACTTCTCATCGCGGAAGGT
AACGAATCCAAATCCTCTGGATCTTCCAGTCTCGCGATCGTTAATAATCT
TCGATTCAAGGATATCGCCGTAAGCACTGAAGGCCTCATGGAGAGAGCTG
TCAGTGGTGGCCCAGGCCAGGCCGCCTACGAAGCACCGA
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