CN188958

Overview
NameCN188958
Unique NameCN188958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188958_ssr6 microsatellite CN188958_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C90D2_ORYSJ (Cytochrome P450 90D2 OS=Oryza sativa subsp. japonica GN=CYP90D2 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.565e-45
Identity = 68/86 (79.07%), Postives = 79/86 (91.86%), Query Frame = -1
Query:  466 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTQF 723
            KA+RD+E+KG+LIPKGWC F YFRSVHLD++ Y+ PY+FNPWRW++ KD+SN SFTPFGGGQRLCPGLDLARLEASIFLHHLVT F
Sbjct:  374 KAVRDVEVKGHLIPKGWCVFVYFRSVHLDDTLYDEPYKFNPWRWKE-KDMSNGSFTPFGGGQRLCPGLDLARLEASIFLHHLVTSF 458          

HSP 2 Score: 47.7506 bits (112), Expect = 2.565e-45
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = -2
Query:  297 LPTLSLWVAEEDTVVNFPTVRMKRRMPIWVKKRED 401
            L T   WVAEED +VNFPTVR+KR MPI V  +ED
Sbjct:  454 LVTSFRWVAEEDHIVNFPTVRLKRGMPIRVTAKED 488          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C90C1_ARATH (Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 7.584e-38
Identity = 61/89 (68.54%), Postives = 73/89 (82.02%), Query Frame = -1
Query:  463 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSS--FTPFGGGQRLCPGLDLARLEASIFLHHLVTQFS 723
            KA++D+EIKGYLIPKGWC  A F SVH+DE  Y+ PYQF+PWRW      +NSS  FTPFGGGQRLCPGL+L++LE SIFLHHLVT++S
Sbjct:  397 KALKDVEIKGYLIPKGWCVLASFISVHMDEDIYDNPYQFDPWRWDRINGSANSSICFTPFGGGQRLCPGLELSKLEISIFLHHLVTRYS 485          

HSP 2 Score: 43.1282 bits (100), Expect = 7.584e-38
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = -2
Query:  297 LPTLSLWVAEEDTVVNFPTVRMKRRMPIWVKKRED 401
            L T   W AEED +V+FPTV+MKRR+PI V   +D
Sbjct:  480 LVTRYSWTAEEDEIVSFPTVKMKRRLPIRVATVDD 514          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C90A1_ARATH (Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CYP90A1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.352e-29
Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = -1
Query:  463 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSS--FTPFGGGQRLCPGLDLARLEASIFLHHLVTQFS 723
            +AM D+EIKGY IPKGW  F+ FR+VHLD ++++    FNPWRWQ N   +  S  FTPFGGG RLCPG +LAR+  S+FLH LVT FS
Sbjct:  352 RAMTDVEIKGYKIPKGWKVFSSFRAVHLDPNHFKDARTFNPWRWQSNSVTTGPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTGFS 440          

HSP 2 Score: 35.4242 bits (80), Expect = 2.352e-29
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = -2
Query:  300 WV-AEEDTVVNFPTVRMKRRMPIWVKKRE 383
            WV AE+D +V FPT R ++R PI+VK+R+
Sbjct:  441 WVPAEQDKLVFFPTTRTQKRYPIFVKRRD 469          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C72B1_PINTA (Abietadienol/abietadienal oxidase OS=Pinus taeda GN=CYP720B1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  466 DIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSS-FTPFGGGQRLCPGLDLARLEASIFLHHLVTQF 711
            D ++K  LIPKGW  FA+  + HLDE  +     FNPWRW+ ++D+SN+  F+PFGGG RLCPG  LARLE ++FLH  +T+F
Sbjct:  369 DTKVKDCLIPKGWVVFAFLTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELALFLHIFITRF 451          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C90B1_ARATH (Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CYP90B1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = -1
Query:  463 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSS-----------FTPFGGGQRLCPGLDLARLEASIFLHHLVTQFS 723
            KA++D+  KGY IP GW       +VHLD S Y+ P  FNPWRWQ   + ++SS           + PFGGG RLC G +LA+LE ++F+HHLV +F+
Sbjct:  387 KALKDVRYKGYDIPSGWKVLPVISAVHLDNSRYDQPNLFNPWRWQQQNNGASSSGSGSFSTWGNNYMPFGGGPRLCAGSELAKLEMAVFIHHLVLKFN 484          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C85A3_SOLLC (Cytochrome P450 85A3 OS=Solanum lycopersicum GN=CYP85A3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  466 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTQF 723
            K  +D+E+ GY+IPKGW  + Y R ++ D   Y  PY FNPWRW +N     SSF  FGGG RLCPG +L   E S FLH+ VT++
Sbjct:  353 KTTQDMELNGYMIPKGWRIYVYTRELNYDPLIYPDPYTFNPWRWLENNLDHQSSFLMFGGGTRLCPGKELGVAEISTFLHYFVTRY 438          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C85A2_ARATH (Cytochrome P450 85A2 OS=Arabidopsis thaliana GN=CYP85A2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  466 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTQF 723
            K   D+E+ GYLIPKGW  + Y R ++ D S YE P  FNPWRW +    S S F  FGGG RLCPG +L   E S FLH+ VT++
Sbjct:  351 KTTHDLELNGYLIPKGWRIYVYTREINYDTSLYEDPMIFNPWRWMEKSLESKSYFLLFGGGVRLCPGKELGISEVSSFLHYFVTKY 436          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C85A1_ARATH (Cytochrome P450 85A1 OS=Arabidopsis thaliana GN=CYP85A1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  466 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTQF 723
            K  RD+EI GYLIPKGW  + Y R ++ D + YE P  FNPWRW      S +S   FGGG RLCPG +L  +E S FLH+ VT++
Sbjct:  351 KTTRDLEINGYLIPKGWRIYVYTREINYDANLYEDPLIFNPWRWMKKSLESQNSCFVFGGGTRLCPGKELGIVEISSFLHYFVTRY 436          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: C85A1_SOLLC (Cytochrome P450 85A1 OS=Solanum lycopersicum GN=CYP85A1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.337e-19
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = -1
Query:  466 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTQF 723
            K  +D+EI GY+IPKGW  + Y R ++ D   Y  PY FNPWRW D      +SF  FGGG R CPG +L   E S FLH+ VT++
Sbjct:  350 KTTQDMEINGYIIPKGWRIYVYTRELNYDPRLYPDPYSFNPWRWMDKSLEHQNSFLVFGGGTRQCPGKELGVAEISTFLHYFVTKY 435          
BLAST of CN188958 vs. ExPASy Swiss-Prot
Match: THAH_ARATH (Cytochrome P450 708A2 OS=Arabidopsis thaliana GN=CYP708A2 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = -1
Query:  457 KAMRDIEIKGYLIPKGWCFFAYFRSVHLDESNYEWPYQFNPWRWQDNKDISNS-SFTPFGGGQRLCPGLDLARLEASIFLHHLVTQFSGS 723
            KA+ D+EIKGY IP GW       +VH +++ YE P +FNPWRW+  +  S S +F  FGGG R C G + ARL+ SIF+HHLVT +  S
Sbjct:  361 KAVNDVEIKGYTIPAGWIVAVIPPAVHFNDAIYENPLEFNPWRWEGKELRSGSKTFMVFGGGVRQCVGAEFARLQISIFIHHLVTTYDFS 450          
The following BLAST results are available for this feature:
BLAST of CN188958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
C90D2_ORYSJ2.565e-4579.07Cytochrome P450 90D2 OS=Oryza sativa subsp. japoni... [more]
C90C1_ARATH7.584e-3868.54Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=RO... [more]
C90A1_ARATH2.352e-2959.55Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CY... [more]
C72B1_PINTA1.619e-2053.01Abietadienol/abietadienal oxidase OS=Pinus taeda G... [more]
C90B1_ARATH2.761e-2045.92Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CY... [more]
C85A3_SOLLC6.150e-2050.00Cytochrome P450 85A3 OS=Solanum lycopersicum GN=CY... [more]
C85A2_ARATH1.049e-1951.16Cytochrome P450 85A2 OS=Arabidopsis thaliana GN=CY... [more]
C85A1_ARATH1.370e-1951.16Cytochrome P450 85A1 OS=Arabidopsis thaliana GN=CY... [more]
C85A1_SOLLC2.337e-1948.84Cytochrome P450 85A1 OS=Solanum lycopersicum GN=CY... [more]
THAH_ARATH6.800e-1950.00Cytochrome P450 708A2 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188958 ID=CN188958; Name=CN188958; organism=Citrus sinensis; type=EST; length=723bp
GCAGGTAATAATAATAATGATATTATTTAATTATTGGGTCCCAATAAAAA
ATATATACACTCCAATTGCTATTTGTGCAATAACCTATAAAATATGAAAA
GAGGACAAAGTAGACGTGTCAGCTTCTGATGCCCCCACACGTGTGCTCTA
GGACCAAAACCCTAGTTCTTGTTGTCTTTTATTTGGTCTCTTCCTGTTGG
TTTGCTTTTTCAAGTATCATTTTATGGAAGTTTCTTTGGACGCTGGCCAA
AGTAATTTGACTCATCAAGTGGCTCAATGATCTAAGTCAATTTATAATCT
TCTCTCTTTTTGACCCAAATTGGCATCCTTCTCTTCATTCTTACAGTGGG
AAAGTTGACAACTGTATCTTCCTCAGCCACCCACAAGCTTAAAGTGGGTA
ACGTTTGGTGTGTCTTGCTAGGATTTGGCATTTTCTCACATCCACATAAG
AGTAGTTGACCCACTGAATTGAGTAACAAGGTGGTGCAGGAAGATGGAAG
CTTCGAGCCTGGCCAAGTCAAGACCAGGGCATAGTCTTTGTCCACCTCCA
AATGGAGTAAAGCTGCTGTTGCTTATATCTTTATTGTCTTGCCACCTCCA
TGGATTGAATTGGTAAGGCCATTCGTAGTTACTTTCATCAAGATGAACAG
ATCTAAAATATGCAAAAAAGCACCATCCTTTTGGTATTAGATACCCTTTT
ATCTCAATGTCTCTCATGGCCTT
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