CN188956

Overview
NameCN188956
Unique NameCN188956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GALK1_ARATH (Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=2 SV=2)

HSP 1 Score: 286.574 bits (732), Expect = 9.115e-77
Identity = 138/200 (69.00%), Postives = 164/200 (82.00%), Query Frame = 1
Query:   49 MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCE 648
            MA+ EE+ VP F SL+ VYGEG  L+EA +RFD L + F  VF   P ++AR PGRVNLIGEHIDYEGYSVLPMAIRQDTI+AIRK    E +K L+IANV+DKY MCTYPA+PDQEID+K+H+WGHYFIC YK F+EY K+KG+++G PVGLD+LVDG VPTGSGLSSS AFVCS+T+A+MA FG    KKE+AQLTCE
Sbjct:    1 MAKPEEVSVPIFTSLEPVYGEGSLLQEATQRFDVLKANFNDVFGASPQLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIIAIRKC---EDQKQLRIANVNDKYTMCTYPADPDQEIDLKNHKWGHYFICAYKGFHEYAKSKGVNLGSPVGLDVLVDGIVPTGSGLSSSAAFVCSATIAIMAVFGHNFEKKELAQLTCE 197          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GALK_DICDI (Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.281e-31
Identity = 69/176 (39.20%), Postives = 105/176 (59.66%), Query Frame = 1
Query:  124 EEAERRFDNLNSKFIQVF-AQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAE--PDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 642
            E  ++R++ LN  F +++    P  Y R PGRVNLIGEH+DY GY VLP A+ QDTIVA+    +K    ++ I N ++KY   +       D EID+K H W +Y +  +K   + ++ KG   G    +++L  G VP G+G+SSS+A VC ST+A+     + + K+E+AQL+
Sbjct:   23 ENNKKRYEELNETFSKIYNGDKPIFYFRAPGRVNLIGEHVDYSGYCVLPFALEQDTIVAV--SFNKLNNDIINIHNCNEKYTPKSIDVSGGGDIEIDMKRHHWTNYVLAAWKGVSQAME-KG---GKLKSVNLLYSGNVPMGAGVSSSSALVCVSTLAISYCNNLILNKEELAQLS 192          

HSP 2 Score: 36.965 bits (84), Expect = 2.281e-31
Identity = 14/31 (45.16%), Postives = 24/31 (77.42%), Query Frame = 2
Query:  620 RKRLRNLHVKCEQFIGTQSGGMDQAISIMAK 712
            ++ L  L +K E+++G +SGGMDQ+IS +A+
Sbjct:  185 KEELAQLSIKSERYVGVESGGMDQSISFLAE 215          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GALK2_PONAB (N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.842e-28
Identity = 64/167 (38.32%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  139 RFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 639
            R   L   F   F   P  Y R PGRVN+IGEHIDY GYSVLPMA+ QD ++A+    +      L++AN +  Y   +  A  + +ID     W +YF+CG K   E+     L      G++ LVDG +P  SGLSSS+A VC + +  +   G  + K E+A++
Sbjct:   18 RLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKT----YTLQLANTNPLYPDLSTSAN-NIQIDKTKPLWHNYFLCGLKGIQEHFGVSNL-----TGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEI 174          

HSP 2 Score: 33.8834 bits (76), Expect = 2.842e-28
Identity = 14/28 (50.00%), Postives = 21/28 (75.00%), Query Frame = 2
Query:  629 LRNLHVKCEQFIGTQSGGMDQAISIMAK 712
            L  +  K E++IGT+ GGMDQ+IS +A+
Sbjct:  171 LAEICAKSERYIGTEGGGMDQSISFLAE 198          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GALK2_HUMAN (N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.816e-28
Identity = 64/167 (38.32%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  139 RFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 639
            R   L   F   F   P  Y R PGRVN+IGEHIDY GYSVLPMA+ QD ++A+    +      L++AN +  Y   +  A  + +ID     W +YF+CG K   E+     L      G++ LVDG +P  SGLSSS+A VC + +  +   G  + K E+A++
Sbjct:   18 RLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKT----YALQLANTNPLYPDFSTSAN-NIQIDKTKPLWHNYFLCGLKGIQEHFGLSNL-----TGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEI 174          

HSP 2 Score: 33.8834 bits (76), Expect = 4.816e-28
Identity = 14/28 (50.00%), Postives = 21/28 (75.00%), Query Frame = 2
Query:  629 LRNLHVKCEQFIGTQSGGMDQAISIMAK 712
            L  +  K E++IGT+ GGMDQ+IS +A+
Sbjct:  171 LAEICAKSERYIGTEGGGMDQSISFLAE 198          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_SCHPO (Galactokinase OS=Schizosaccharomyces pombe GN=gal1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.797e-27
Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  124 EEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQ-EIDIKHHQWGHYFICGYKAFYEYVKAKGLDV-----GPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKE 627
            +E + R+  L + F Q +   PD ++R PGRVN+IGEHIDY  +SVLPMAI  D IV++   D  + E  L   N   K  +   P++    EI+  HH WG+YF C     ++Y+  K  ++      P  GL ++ DG VPTG GLSSS AF  +S +A++ A G+    KE
Sbjct:   17 KENKARYAKLLNSFEQKYHCKPDFFSRSPGRVNIIGEHIDYNYFSVLPMAIDVDVIVSVTTSDDAKVE--LNNTNPEFKEEILELPSDGAVIEINKTHHTWGNYFRCSMIVAHKYILEKYPELVSGGKKPLKGLKLIFDGNVPTGGGLSSSAAFCVASILAILKANGINTITKE 188          

HSP 2 Score: 26.5646 bits (57), Expect = 1.797e-27
Identity = 11/28 (39.29%), Postives = 17/28 (60.71%), Query Frame = 2
Query:  620 RKRLRNLHVKCEQFIGTQSGGMDQAISI 703
            ++ L  + V  E ++G  +GGMDQ  SI
Sbjct:  187 KEDLVKISVVSEHYVGVNTGGMDQCASI 214          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_CANAL (Galactokinase OS=Candida albicans GN=GAL1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.138e-26
Identity = 77/209 (36.84%), Postives = 110/209 (52.63%), Query Frame = 1
Query:   67 LPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPP-DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKE-----------AEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGV-EVPKKEIAQLT--CE 648
            + VPTF  L + Y    +L ++  R+  L   F   F     D +AR PGRVNLIG+HIDY  + VLPMAI  D IVA+  +D  E           A++ + + N +D +           EID +HH W +YF C       Y+  + L  G   G+ +  DG VPTG GLSSS AF  +ST+A++ A GV ++ K ++ ++T  CE
Sbjct:    1 MSVPTFDDL-SFYSNDQELTKS--RYLKLVEIFQSNFPNASIDFFARSPGRVNLIGDHIDYNFFPVLPMAISADVIVAVNVNDEPEIVITHTDSKNFAKETIPLTNNNDGF-----------EIDSQHHSWANYFKCALIVANNYLTEQNLK-GQLKGMKLTFDGNVPTGGGLSSSAAFCVASTLAILHANGVKDITKADLTRITVVCE 194          

HSP 2 Score: 30.0314 bits (66), Expect = 1.138e-26
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  629 LRNLHVKCEQFIGTQSGGMDQAISI 703
            L  + V CE ++G  +GGMDQ  S+
Sbjct:  186 LTRITVVCEHYVGVNTGGMDQCASV 210          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GALK2_RAT (N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  139 RFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 639
            R   L   F   F   P  Y R PGRVN+IGEHIDY GYSVLPMA+ QD ++A+         + L++AN    Y   +  A  +  ID     W +YF+CG+K   E+    GL   P  G++ LVDG +P  SGLSSS+A VC + +  +   G+ + K E+A++
Sbjct:   18 RLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDMLIAV----GPVKTQTLQLANTDPLYPDFSTTAN-NICIDKTQPLWHNYFLCGFKGIQEHF---GLTQLP--GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGMRLSKVELAEI 174          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_CANMA (Galactokinase (Fragment) OS=Candida maltosa GN=GAL1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.733e-24
Identity = 66/178 (37.08%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  121 LEEAERRFDNLNSKFIQVFAQPPD---VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGV-EVPKKEIAQLT 642
            +E  ++RF  +   F   F  P D    +AR PGRVNLIG+HIDY  + VLPMAI  D I A+  + + E    + I N   K  +    A  + +ID +HH W +YF C      +Y++ +G  V    G+ +  +G VPTG GLSSS AF  +ST+A++ A G+ ++ K+++ ++T
Sbjct:   15 VEPNQQRFTEVVKTFQTNF--PGDDITFFARSPGRVNLIGDHIDYNFFPVLPMAIANDVIAAVNVNSTNE----IIITNTDSKDFLKEVIALRNSQIDQEHHSWANYFKCALIVAKQYLEERG--VTSLKGMKLTFNGNVPTGGGLSSSAAFCVASTLAIIRANGITDLTKQDLTRIT 184          

HSP 2 Score: 26.5646 bits (57), Expect = 1.733e-24
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 2
Query:  620 RKRLRNLHVKCEQFIGTQSGGMDQAISI 703
            ++ L  + V  E ++G  +GGMDQ  S+
Sbjct:  177 KQDLTRITVVSEHYVGVNTGGMDQCASV 204          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GAL1_CANPA (Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.882e-24
Identity = 67/171 (39.18%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  139 RFDNLNSKFIQVFAQPP-DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANV-SDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVE-VPKKEIAQLT 642
            R+ NL   F   +     + +AR PGRVNLIG+HIDY  + VLPMAI  D + A+    S     ++ IAN  S K+   T     +  ID +HH W +YF CG     ++++ K +      G++I   GTVPTG GLSSS AF  +ST+A++ A GVE + K ++ ++T
Sbjct:   21 RYANLVKTFKSKYPNDEIEFFARSPGRVNLIGDHIDYNYFPVLPMAIEVDVVAAV----STNNNDMIVIANTDSAKFPKETVSLAEEFTIDREHHTWANYFKCGLIVASKFLQEKAMT--KLKGMNITFSGTVPTGGGLSSSAAFCVASTLAVLYANGVEDISKADLTRIT 185          

HSP 2 Score: 25.409 bits (54), Expect = 2.882e-24
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  629 LRNLHVKCEQFIGTQSGGMDQAISI 703
            L  + V  E ++G  +GGMDQ  S+
Sbjct:  181 LTRITVVSEHYLGLNNGGMDQCASV 205          
BLAST of CN188956 vs. ExPASy Swiss-Prot
Match: GALK2_MOUSE (N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24
Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  139 RFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDIKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 639
            R   L   F   F   P  Y R PGRVN+IGEHIDY GYSV+PMA+ QD ++A+    +      L++AN    Y   +  A  +  ID     W +YF+CG+K   E+    GL   P  G++ LVDG +P  SGLSSS+A VC + +  +   G+ + K E+A++
Sbjct:   18 RLLKLKEMFNSKFGSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKT----HTLQLANTDPLYPDFSTTAN-NICIDKTKPLWHNYFLCGFKGIQEHF---GLSKLP--GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGLRLSKVELAEI 174          
The following BLAST results are available for this feature:
BLAST of CN188956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GALK1_ARATH9.115e-7769.00Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=2... [more]
GALK_DICDI2.281e-3139.20Galactokinase OS=Dictyostelium discoideum GN=galK ... [more]
GALK2_PONAB2.842e-2838.32N-acetylgalactosamine kinase OS=Pongo abelii GN=GA... [more]
GALK2_HUMAN4.816e-2838.32N-acetylgalactosamine kinase OS=Homo sapiens GN=GA... [more]
GAL1_SCHPO1.797e-2739.66Galactokinase OS=Schizosaccharomyces pombe GN=gal1... [more]
GAL1_CANAL1.138e-2636.84Galactokinase OS=Candida albicans GN=GAL1 PE=3 SV=... [more]
GALK2_RAT1.381e-2439.52N-acetylgalactosamine kinase OS=Rattus norvegicus ... [more]
GAL1_CANMA1.733e-2437.08Galactokinase (Fragment) OS=Candida maltosa GN=GAL... [more]
GAL1_CANPA2.882e-2439.18Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3... [more]
GALK2_MOUSE3.077e-2438.92N-acetylgalactosamine kinase OS=Mus musculus GN=Ga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001B14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188956 ID=CN188956; Name=CN188956; organism=Citrus sinensis; type=EST; length=716bp
ACGGATTGAGTAGTCGACGGTCAAGTAAAGGTCAAACTAGAAAAAAAAAT
GGCGAGGCACGAAGAATTACCAGTGCCGACTTTTTGGTCACTGAAGGCAG
TGTACGGAGAAGGATTGCAGCTGGAAGAGGCTGAACGTCGTTTCGATAAC
TTGAATTCAAAGTTCATTCAAGTCTTTGCTCAGCCTCCCGATGTCTACGC
GCGATGTCCAGGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAG
GATATTCTGTACTGCCAATGGCGATTCGGCAAGACACAATCGTGGCAATA
AGGAAGCACGATTCAAAAGAGGCTGAAAAGGTTCTTAAAATAGCTAATGT
TAGTGACAAGTACAATATGTGTACTTATCCTGCTGAACCTGATCAGGAAA
TTGACATAAAGCATCATCAATGGGGCCACTATTTCATTTGTGGATATAAA
GCTTTTTATGAATATGTTAAAGCTAAAGGATTGGATGTTGGTCCACCGGT
TGGACTTGATATTCTTGTTGATGGCACGGTTCCAACAGGTTCTGGGCTAT
CCAGCTCCACAGCATTTGTTTGCTCTTCAACGGTTGCTCTTATGGCTGCT
TTCGGCGTGGAAGTTCCAAAGAAAGAGATTGCGCAACTTACATGTGAAAT
GTGAACAATTTATTGGAACACAGTCTGGTGGGATGGACCAGGCAATCTCT
ATCATGGCCAAATCTG
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