CN182115

Overview
NameCN182115
Unique NameCN182115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 7.379e-53
Identity = 104/124 (83.87%), Postives = 105/124 (84.68%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNAS NELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR 124          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 7.379e-53
Identity = 104/124 (83.87%), Postives = 105/124 (84.68%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNAS NELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR 124          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.644e-52
Identity = 103/124 (83.06%), Postives = 106/124 (85.48%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRDSMH                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNAS NELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGR 124          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 9.020e-51
Identity = 102/124 (82.26%), Postives = 104/124 (83.87%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRILDV YNAS NELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR
Sbjct:    1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGR 124          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.178e-50
Identity = 98/124 (79.03%), Postives = 104/124 (83.87%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNAS NELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGR 124          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.817e-36
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRDS H                 YELGR  +NTKL S K VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS NELVRT+TLVK+AIV VD  PFK W+  HYG+++G+
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-KLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGK 123          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.070e-35
Identity = 73/124 (58.87%), Postives = 88/124 (70.97%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRD+ H                 YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNAS NELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGR 123          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.385e-35
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI 427
            MGISRDS H                 YELGR  +NTKL S + VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS NELVRT+TLVK+AIV VD  PFK W+  HYGV++
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-RLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGVEL 121          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.385e-35
Identity = 74/124 (59.68%), Postives = 89/124 (71.77%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRDS H                 YELGRQPA TK+   K VR +RVRGGN+K RALRL++GN++WGSEA T K+RIL+VVYNAS NELVRT T VK  I+Q+DA PF+Q+Y  HYG+DIG+
Sbjct:    1 MGISRDSRHKRRLTGGKHPYTCKKRKYELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALRLESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGIDIGK 123          
BLAST of CN182115 vs. ExPASy Swiss-Prot
Match: RS8_DICDI (40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.938e-35
Identity = 74/127 (58.27%), Postives = 90/127 (70.87%), Query Frame = 2
Query:   62 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSN---KTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASYNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 433
            MGISRD++H                 YELGRQ A TK+ S    K VR IRVRGG+ K+RALRLDTGN+SW +E +TRK RIL+VVYNA+ N+LVRT TLVK +IVQ+DA P+KQWY  HYGV +G+
Sbjct:    1 MGISRDALHKHRLTGAARKCNYKKRKYELGRQAAKTKICSQGEEKRVRSIRVRGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRTNTLVKGSIVQIDATPYKQWYETHYGVVVGK 127          
The following BLAST results are available for this feature:
BLAST of CN182115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_ORYSJ7.379e-5383.8740S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_MAIZE7.379e-5383.8740S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_PRUAR1.644e-5283.0640S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH9.020e-5182.2640S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH1.178e-5079.0340S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_THEPA2.817e-3660.4840S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]
RS8_ICTPU1.070e-3558.8740S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_THEAN2.385e-3560.6640S ribosomal protein S8 OS=Theileria annulata GN=... [more]
RS8_GRIJA2.385e-3559.6840S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8_DICDI6.938e-3558.2740S ribosomal protein S8 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182115 ID=CN182115; Name=CN182115; organism=Citrus sinensis; type=EST; length=496bp
GGCTGAATCACCTATCAATCGCCCACAGACAGAGAAACCCTAAGAATTTC
TCTCTGCGAAAATGGGTATTTCCCGTGATTCCATGCACAAGAGGCGTGCT
ACTGGGGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGG
AAGGCAACCTGCAAATACTAAGCTATCAAGCAACAAGACAGTGAGGAGGA
TTAGGGTTCGTGGAGGTAATGTGAAATGGCGTGCTTTGAGGCTTGACACA
GGAAACTACTCCTGGGGAAGTGAAGCAGTGACTCGTAAGACCAGAATTCT
GGATGTGGTATACAATGCCTCCTATAATGAGCTGGTCCGTACTCAAACTT
TGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTGG
TATCTCCAGCATTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAGC
TGCTGCCACAACCAAGAAAGAAGGAGAGGAAGGAGAGGCTCCCGCC
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