CN182112

Overview
NameCN182112
Unique NameCN182112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182112 vs. ExPASy Swiss-Prot
Match: SEP15_HUMAN (15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 50/147 (34.01%), Postives = 81/147 (55.10%), Query Frame = -2
Query:  283 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK 720
            +L   ++ AV+    E  S+  C +LGF+   LCS C+   ++   Q L  DC  CC E++     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  + + +FL EK++
Sbjct:   17 LLLATVLQAVSAFGAE-FSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLE 160          
BLAST of CN182112 vs. ExPASy Swiss-Prot
Match: SEP15_BOVIN (15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.486e-17
Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = -2
Query:  283 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK 720
            +L   ++  V+    E  S+  C +LGF+   LCS C+   ++   Q L  DC  CC E++     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  + + +FL EK++
Sbjct:   17 LLLATVLQTVSALGAE-FSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLE 160          
BLAST of CN182112 vs. ExPASy Swiss-Prot
Match: SEP15_DANRE (15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.845e-16
Identity = 46/131 (35.11%), Postives = 74/131 (56.49%), Query Frame = -2
Query:  283 QLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK 672
            +LS+  C +LGF+   LCS C    ++  +Q L   C +CC E++     K+ Y GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  + + +FL EK++
Sbjct:   23 ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLE 151          
BLAST of CN182112 vs. ExPASy Swiss-Prot
Match: SEP15_PIG (15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 45/131 (34.35%), Postives = 73/131 (55.73%), Query Frame = -2
Query:  283 QLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK 672
            + S+  C +LGF+   LC  C+   ++   Q L  DC  CC E++     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  + + +FL EK++
Sbjct:   32 EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLQ 160          
BLAST of CN182112 vs. ExPASy Swiss-Prot
Match: SEP15_RAT (15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = -2
Query:  283 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK 720
            +L      AV+    E  S+  C +LGF+   LCS C+   ++     L   C  CC E++     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  + + +FL EK++
Sbjct:   17 LLLATAFQAVSALGAE-FSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLE 160          
BLAST of CN182112 vs. ExPASy Swiss-Prot
Match: SEP15_MOUSE (15 kDa selenoprotein OS=Mus musculus GN=Sep15 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = -2
Query:  283 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK 720
            +L      AV+    E  ++  C +LGF+   LCS C+   ++     L   C  CC E++     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  + + +FL EK++
Sbjct:   17 LLLATAFQAVSALGAE-FASEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLE 160          
BLAST of CN182112 vs. ExPASy Swiss-Prot
Match: SEP15_ONCMY (15 kDa selenoprotein OS=Oncorhynchus mykiss GN=sep15 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  283 LSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK 669
            LS+  C +LGF+    CS C+   E+     +   C +CC ++      K+ Y GAILE C  KL  +P++  F+  +K K F  ++++YV  + P L +LD+ G   E   I  W  + + +FL EK++
Sbjct:   24 LSSEACRELGFSSCWGCSSCDLLGEFSLSS-IQPVCKQCCQQEVHMESRKL-YPGAILEVCGUKLGRFPQVQAFVRSDKPKMFKGLQIKYVRGADPILKLLDDNGNIAEEPSILKWNTDSVEEFLSEKLE 151          
The following BLAST results are available for this feature:
BLAST of CN182112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SEP15_HUMAN5.732e-1734.0115 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1... [more]
SEP15_BOVIN7.486e-1733.3315 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 S... [more]
SEP15_DANRE2.845e-1635.1115 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 ... [more]
SEP15_PIG6.337e-1634.3515 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 S... [more]
SEP15_RAT5.365e-1532.6515 kDa selenoprotein OS=Rattus norvegicus GN=Sep15... [more]
SEP15_MOUSE1.195e-1431.9715 kDa selenoprotein OS=Mus musculus GN=Sep15 PE=1... [more]
SEP15_ONCMY5.021e-1332.3115 kDa selenoprotein OS=Oncorhynchus mykiss GN=sep... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182112 ID=CN182112; Name=CN182112; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTCAAAATTATGAAAACTTGTCATTGAAGTAAAATAGTATCAGAGT
AGCAGAATTTATCTCGAAGCAAACAACTTCTCCAGAATATGTCCAAGATA
CACTTCAAATGTGCACTGGATAGTAAGTAATTCATCACATTTGGATTTAA
TATTCAATCTAAGATTAAAAAAGAAGGGTAATAATTTATGCCCACTCTCA
TAGTATACTACATTGCATGTAAATTCAATTTTCCAATAAAAAGTTATACA
TCACTCTAAATCTTTGCTGAAGCTGAAGTAGGCTTAACCTTCTCTTGTAA
GAACTGCAGCATATGTTCCCGTTTCCAATTGTCAATTCTTATGGTTTCCT
TGTGTTGCCCCTCCTCATCCAGCATTATCAACTTAGGCGGAGAATTGAAA
ACATATTGAACTCTAACTGTAGGAAACTTATCCTTCTCTTCTTCAATGAA
ACCAACAATTTCAGGATAGAAAACTAATTTCCTCATGCACGCCTCCAGTA
TTGCACCTGAATATGTAATCTTGCTCATGGAATCATCAGAATCCTCTGTG
CAACATTTCAAGCAGTCAGCTACCAACTCTTGGTCTTTGACATACTCAGC
GAAAGTGTTGCAATCAGAGCAAAGAGCAAGCCCTGTGAATCCCAGATCCT
CACATTCTCTTGTGCTCAGTTGCTCTTTTGATGTCACTGCAACTGCTGAT
ATTATCACTATAAACAACACCGCTTCATAAATATTCGACAAAACCATCTC
TCTTTTTCTCTTTCTCCAAACTCTAAAATCGAATTTCTTTTTTTTT
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