CN182107

Overview
NameCN182107
Unique NameCN182107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.921e-24
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGRCHKERS FEGPWTRNPL FDNS FTELL+G+K+G LQLPSDKALL DP FRPLV
Sbjct:  163 HTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFRPLV 221          

HSP 2 Score: 23.8682 bits (50), Expect = 1.921e-24
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -1
Query:  210 HLKLFELGFAEA 245
            HLKL ELGFA+A
Sbjct:  239 HLKLSELGFADA 250          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.214e-23
Identity = 50/59 (84.75%), Postives = 51/59 (86.44%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HT+G  HKERS FEGPWT NPLIFDNS FTELLTGEKDG LQLPSDKALL D VFRPLV
Sbjct:  163 HTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLV 221          

HSP 2 Score: 25.0238 bits (53), Expect = 1.214e-23
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -1
Query:  210 HLKLFELGFAEA 245
            HLKL ELGFAEA
Sbjct:  239 HLKLSELGFAEA 250          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.580e-23
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGRCHKERS FEGPWTRNPL FDNS FTELL+G+K+G LQLPSDKALL DP F PLV
Sbjct:  163 HTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFCPLV 221          

HSP 2 Score: 23.8682 bits (50), Expect = 1.580e-23
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -1
Query:  210 HLKLFELGFAEA 245
            HLKL ELGFA+A
Sbjct:  239 HLKLSELGFADA 250          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.529e-23
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGRCHKERS FEG WT NPLIFDNS FTEL++GEK+G LQLPSDKAL+ DP FRPLV
Sbjct:  164 HTLGRCHKERSGFEGAWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALMADPAFRPLV 222          

HSP 2 Score: 23.483 bits (49), Expect = 4.529e-23
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = -1
Query:  213 HLKLFELGFAE 245
            HLKL ELGFAE
Sbjct:  240 HLKLSELGFAE 250          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.671e-23
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGRCHK+RS FEG WT NPLIFDNS F ELL+GEK+G LQL SDKALLDDPVFRPLV
Sbjct:  163 HTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLV 221          

HSP 2 Score: 23.0978 bits (48), Expect = 7.671e-23
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = -1
Query:  210 HLKLFELGFAEA 245
            H+KL ELGFA+A
Sbjct:  239 HMKLSELGFADA 250          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.066e-21
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGRCHKERS FEG WT NPLIFDNS F E+L+GEK+G LQLP+DKALLDDP+F P V
Sbjct:  163 HTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFV 221          

HSP 2 Score: 22.3274 bits (46), Expect = 1.066e-21
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = -1
Query:  213 HLKLFELGFAE 245
            HLKL ELGFA+
Sbjct:  239 HLKLSELGFAD 249          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGR HKERS+FEGPWT++PL FDNS F ELL GE  G LQL +DKALLDDP F P V
Sbjct:  158 HTLGRAHKERSDFEGPWTQDPLKFDNSYFVELLKGETPGLLQLKTDKALLDDPKFHPFV 216          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.488e-17
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGR H ERS F+GPWT+ PL FDNS F ELL GE +G L+LP+DK LL+DP FR LV
Sbjct:  160 HTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESEGLLKLPTDKTLLEDPEFRRLV 218          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.909e-16
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLGR H ERS FEG WT+ PL FDNS F ELL GE +G L+LP+DKALL+DP FR  V
Sbjct:  160 HTLGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALLEDPSFRRYV 218          
BLAST of CN182107 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.010e-13
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = -3
Query:  298 HTLGRCHKERSEFEGPWTRNPLIFDNS*FTELLTGEKDGFLQLPSDKALLDDPVFRPLV 474
            HTLG+   ERS F+G WT++PL FDNS F ELL    +G L+LP+DKAL++DP FR  V
Sbjct:  161 HTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYV 219          
The following BLAST results are available for this feature:
BLAST of CN182107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APX1_ORYSJ1.921e-2484.75L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_PEA1.214e-2384.75L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX1_ORYSI1.580e-2383.05L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX2_ORYSJ4.529e-2381.36L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ARATH7.671e-2383.05L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX2_ARATH1.066e-2177.97L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX5_ARATH1.068e-1872.88L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]
APX3_ARATH4.488e-1767.80L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]
APX4_ORYSJ2.909e-1667.80Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ORYSJ3.010e-1357.63Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182107 ID=CN182107; Name=CN182107; organism=Citrus sinensis; type=EST; length=476bp
GAGGAGTTGATATTATTAGTTCTAAAGGATGATAGTAACCATAGTATTCG
ACCCAACTTTTCACAATCCACCATGTGCAACAAAACAAAACCACAAAATT
CCACCAACAACATCTTGAAATTCGAATTTTCTGAGAATTCAAAAAACATA
AAATAGAGGCACACTGTTGTTGGCATCATTCCAACCATTTATTTACTCAG
GTAAATTTAGGCTTCAGCAAATCCTAGCTCAAAGAGCTTGAGATGAGCCT
CAGCATAATCAGCGAAGAAAGCGTCCTCATCCGCAGCATATTTCTCAAAC
AAGAGGGCGGAAAACAGGGTCATCCAAAAGGGCCTTGTCAGATGGCAATT
GCAGAAAACCATCCTTCTCACCAGTCAAGAGCTCCGTGAACTAGGAATTG
TCAAAAATGAGAGGGTTGCGGGTCCATGGTCCCTCAAATTCAGACCTCTC
CTTGTGGCACCTTCCCAAGGTGTGGC
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