CN182092

Overview
NameCN182092
Unique NameCN182092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.743e-76
Identity = 135/207 (65.22%), Postives = 167/207 (80.68%), Query Frame = -2
Query:  136 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLL 756
            M++CF+AL+ IT EIS K+YK HG+NP ++LR++W SLC AFL EAKWF SG LP  EEY+KNG+VSSGVHL ++H + LLG  +T E V LI+SNP IVSS ATILRLWDDLGSAKDENQDG DGSY+  Y+ E++  T ++A+ H   KIS AWKRLN+ECL+P PFS SF++A LNIAR VPLMYSYDD+QRLP  +EY+KSL+
Sbjct:  365 MRVCFEALDMITTEISMKIYKSHGWNPTYALRQSWASLCKAFLVEAKWFNSGYLPTTEEYMKNGVVSSGVHLVMLHAYILLGEELTKEKVELIESNPGIVSSAATILRLWDDLGSAKDENQDGTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRECLNPCPFSRSFSKACLNIARTVPLMYSYDDDQRLP--DEYLKSLM 569          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.888e-30
Identity = 75/214 (35.05%), Postives = 119/214 (55.61%), Query Frame = -2
Query:  121 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLE--EYIKSLLFDNLP 756
            MKICF  L++  NE++    KE  ++ +  L+KAW  LC  +L EAKW+++   P  +EY++N  +S G    LVH +F + + IT E +  ++  P I+   + I RL DDLG++ DE + G+    I  YM E    + E A+++    IS  WK++N++  + +PFS  F   +LN+ARM   +Y + D   L   E  + I SLL   +P
Sbjct:  381 MKICFLTLHNSVNEMALDTMKEQRFHIIKYLKKAWVDLCRYYLVEAKWYSNKYRPSLQEYIENAWISIGAPTILVHAYFFVTNPITKEALDCLEEYPNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNE-TGASEEGAREYIKYLISATWKKMNKDRAASSPFSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIP 593          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.494e-30
Identity = 73/217 (33.64%), Postives = 123/217 (56.68%), Query Frame = -2
Query:  121 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFS--ASFTRASLNIARMVPLMYSYDDNQRLP---RLEEYIKSLLFDNLP 756
            M++CF  L +  N+I   V ++ G N +  L++ W  L   FLTE+KW+ +G  P  EEY++NG++SS V   L+H+F +L   I+ +T+     N  +V S ATILRL +DL ++ +E   G+    +  YM E +  + E+A++H    ISD+W  +N +  + +  S    F  A+ N+ R+V  +Y + D    P   +  +YI+S+LF+ +P
Sbjct:  384 MRMCFLFLYNEINQIGYDVLRDKGLNVIPYLKQVWTDLFKTFLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKNHSVVRSCATILRLANDLATSTEEMARGDSPKSVQCYMYETR-ASEEEARRHMQSMISDSWDIINSDLKTAHTSSLPRGFLAAAANLNRVVQCIYRHGDGHGSPEKTKTVDYIQSVLFNPVP 599          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.651e-29
Identity = 73/212 (34.43%), Postives = 117/212 (55.19%), Query Frame = -2
Query:  130 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDN---QRLPRLEEYIKSLLFD 756
            M+IC+ AL +  NE++    ++ G+N    LRKAW  L  ++L EAKW+  G  P  EEY+KN  +S G    L H+FF L   I  E    +     IV +  TILRL DD+G++ DE + G+    +  YM E ++ + E+A++H    I   WK +N+E ++ + FS  F + S N+ARM   +Y ++ +    +   + + ++ LLFD
Sbjct:  379 MQICYLALFNFVNEMAYDTLRDKGFNSTPYLRKAWVDLVESYLIEAKWYYMGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEDAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNE-KNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVQVSANLARMAQWIYQHESDGFGMQHSLVNKMLRGLLFD 588          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.813e-26
Identity = 77/218 (35.32%), Postives = 118/218 (54.13%), Query Frame = -2
Query:  115 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLG-HGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECL-SPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLE--EYIKSLLFDNLPTQ 756
            MK+CF AL +  NE +  V K+  ++ + S++ AW  L  A+L EAKW+ S   PK EEYL+NG+VS    L ++ I +L G + I  + +  ++SNP IV   + I RL DDLG++ DE Q G+    I  YM E    + E A++H  D +   WK++N       +P + + T   LN+ RM   MY + D   +   E  +   +LLF  +P +
Sbjct:  377 MKMCFLALYNFVNEFAYYVLKQQDFDLLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPL-IITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVARQHIKDMMRQMWKKVNAYTADKDSPLTGTTTEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLE 592          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 74/216 (34.26%), Postives = 115/216 (53.24%), Query Frame = -2
Query:  121 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDS-NPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP---RLEEYIKSLLFDNLP 756
            MK+CF  L +  N+I   V ++ G+N +  L+++W  +C  FL EAKW+ SG  P  EEY++NG +SS V   L+H+F LL    + +T+ ++ S N  +V S ATILRL +DL ++ +E   G+    +  +M E     AE ++ +    I  AW  LN E  S       F  A+ N+ R+   +Y Y D    P   +   +++SLL   LP
Sbjct:  354 MKLCFLCLVNEINQIGYFVLRDKGFNVIPYLKESWADMCTTFLKEAKWYKSGYKPNFEEYMQNGWISSSVPTILLHLFCLL----SDQTLDILGSYNHSVVRSSATILRLANDLATSSEELARGDTMKSVQCHMHETGASEAE-SRAYIQGIIGVAWDDLNMEKKSCR-LHQGFLEAAANLGRVAQCVYQYGDGHGCPDKAKTVNHVRSLLVHPLP 563          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.074e-25
Identity = 72/195 (36.92%), Postives = 104/195 (53.33%), Query Frame = -2
Query:  181 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVR-LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAED-AQKHAMDKISDAWKRLNQECLSPNP-FSASFTRASLNIARMVPLMYSYDD 756
            MK  F    + TNE++  V +EHG+  +   +K    LC   L EAKWF SG  P  +EY++NG +S G  + L+H +F   + +T E +  L D +P IV   + ILRL DDLG+  DE + G+    I  YM  H    +ED A++H    IS++WK +N E  + N  FS  F +   N+ R    +Y Y D
Sbjct:  407 MKTAFYFTYNFTNELAFDVLQEHGFVHIEYFKKLMVELCKHHLQEAKWFYSGYKPTLQEYVENGWLSVGGQVILMHAYFAFTNPVTKEALECLKDGHPNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYM--HDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGD 599          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24
Identity = 69/194 (35.57%), Postives = 103/194 (53.09%), Query Frame = -2
Query:  181 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVR-LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAED-AQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDD 756
            MK+ F  L +  NE++  V +EH +  V  L+ +W  LC  +L EAKWF SG  P  ++Y++N  +S G  +  V+ FF L   IT+E +  L + +       + +LRL DDLG+  DE + G+    I  YM  H    +ED A++H    IS+ WK +N E    + FS  F +A  N+ RM   MY + D
Sbjct:  401 MKLPFFTLFNTVNEMAYDVLEEHNFVTVEYLKNSWAELCRCYLEEAKWFYSGYKPTLKKYIENASLSIGGQIIFVYAFFSLTKSITNEALESLQEGHHAACRQGSLMLRLADDLGTLSDEMKRGDVPKSIQCYM--HDTGASEDEAREHIKFLISEIWKEMNDEDEYNSIFSKEFVQACKNLGRMSLFMYQHGD 592          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.883e-24
Identity = 67/220 (30.45%), Postives = 108/220 (49.09%), Query Frame = -2
Query:  121 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVR-LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQE----CLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP---RLEEYIKSLLFDNLP 756
            MK+CF  L +  N +   V K    + +   +K+W  LC A+L EAKW+  G  P  EEY++N  +S      L+H +      I+ + +  L+     +V   AT+LRL +DL ++ DE   G+    +  YM E   V+ E+A+ H    IS  W  +N E      S +  S  F   ++N+ARM   MY + D    P   ++ + +++LL D +P
Sbjct:  378 MKLCFLTLFNEINAMGCDVLKCKNIDVIPYFKKSWADLCKAYLVEAKWYKGGYKPSVEEYMQNAWISISAPTMLIHFYCAFSGQISVQILESLVQQQQDVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHE-TGVSEEEARTHVQQMISHTWDEMNYEARTAARSSSLLSRRFVETAMNLARMSQCMYQHGDGHGCPDKAKIVDRVQTLLVDPIP 596          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 68/219 (31.05%), Postives = 108/219 (49.32%), Query Frame = -2
Query:  121 MKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSN-PPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQE---CLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP---RLEEYIKSLLFDNLP 756
            M++CF  L +  N I   + K    + +  L+K+W  LC  +L EAKW+  G  P  EEY++N  +S      L+H + +    I+ + +  +  +   IV   AT+LRL +DLG++  E   G+    +  YM E    + E A+ H    ISD W  +N E     + +  S  F  A++N+ARM   MY Y D    P   +  + ++SLL D +P
Sbjct:  376 MRLCFLILYNEINGIGCDILKYKKIDVIPYLKKSWADLCRTYLVEAKWYKRGYKPSLEEYMQNAWISISAPTILIHFYCVFSDQISVQNLETLSQHRQHIVRCSATVLRLANDLGTSPTELARGDVLKSVQCYMHE-TGASEERARDHVHQMISDMWDDMNSETKTACNSSSRSRGFKEAAMNLARMSQCMYQYGDGHGCPEKAKTIDRVQSLLVDPIP 593          
The following BLAST results are available for this feature:
BLAST of CN182092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
LINS_ARATH1.743e-7665.22Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
MYRS_QUEIL1.888e-3035.05Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS02_ARATH5.494e-3033.64Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
SCS_SALOF4.651e-2934.431,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
RLC1_CITLI4.813e-2635.32(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
OCIS_ARATH3.120e-2534.26(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
TPS1_CANSA4.074e-2536.92(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
TPS2_CANSA2.022e-2435.57(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
MYRS2_ARATH5.883e-2430.45Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
CINS_ARATH2.920e-2331.051,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182092 ID=CN182092; Name=CN182092; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTGCTGGATAAATTGAATATTTCTTCTTGAAGATGCTGAACATAAG
ATAAAAGAAACTTCCATAGTATACGTACGTAGGTAAGGAGCTTTATCACT
AACTAGTACACTCCTTGAGTAGGCAAATTATCGAAGAGGAGGGACTTAAT
ATACTCCTCGAGTCTCGGAAGCCTTTGATTGTCATCATAGCTATACATCA
AAGGAACCATTCTGGCAATGTTAAGAGAAGCCCTTGTGAAAGATGCTGAA
AATGGATTTGGGGAGAGGCATTCCTGGTTTAGGCGCTTCCATGCATCTGA
AATCTTATCCATAGCATGCTTTTGTGCATCTTCAGCTGTTACGTCTTGGT
GCTCCATCATGTAGTAATATATGTAAGATCCATCGTTGCCATCTTGATTT
TCATCCTTAGCACTTCCTAAGTCGTCCCAAAGTCGAAGAATTGTTGCGAC
GGACGATACTATGGGCGGGTTGCTGTCAATGAGTCGCACAGTTTCACTGG
TGATGCCATGACCCAGGAGAAAGAAAATGTGCACAAGTCCCAGGTGTACC
CCTGAGCTAACAATCCCATTTTTCAAGTACTCTTCAGCCTTAGGCAATTG
CCCGGAAGCAAACCATTTCGCTTCTGTCAGAAACGCGTTGCACAAACTTC
CCCACGCCTTTCGCAGGGAGTGCACAGGGTTATACCCATGCTCCTTATAC
ACCTTGTTGCTGATTTCATTAGTGATGTCGTTCAGAGCCTTGAAACATAT
CTTCATGCAC
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