CN182089

Overview
NameCN182089
Unique NameCN182089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2303 contig Csv1_Contig2303:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182089 vs. ExPASy Swiss-Prot
Match: LPAT2_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 76/114 (66.67%), Postives = 89/114 (78.07%), Query Frame = -3
Query:  369 WCRDTFVAKDALLDKHNAEDTFSDQECQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPKNSKEPEQTTQ 710
            WCRD FVAKDALLDKH A DTF  Q+ Q I RP KSL VV+SWA ++  G +KFL W+ L SSWKGI  SA GLGI+T+ MQILIR SQSERSTPAKVVP+KPK++  PE ++Q
Sbjct:  269 WCRDQFVAKDALLDKHIAADTFPGQQEQNIGRPIKSLAVVLSWACVLTLGAIKFLHWAQLFSSWKGITISALGLGIITLCMQILIRSSQSERSTPAKVVPAKPKDNHHPESSSQ 382          
BLAST of CN182089 vs. ExPASy Swiss-Prot
Match: LPAT2_BRANA (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = -3
Query:  369 WCRDTFVAKDALLDKHNAEDTFSDQECQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPKNSKEPEQTTQ 710
            WCRD FVAKDALLDKH A DTF  Q+ Q I RP KSL VV+SWA L+  G +KFL WS+L SSWKGIA SAFGLGI+T+ MQILIR SQSERSTPAKV P+KPK++ +   ++Q
Sbjct:  269 WCRDQFVAKDALLDKHIAADTFPGQKEQNIGRPIKSLAVVVSWACLLTLGAMKFLHWSNLFSSWKGIALSAFGLGIITLCMQILIRSSQSERSTPAKVAPAKPKDNHQSGPSSQ 382          
BLAST of CN182089 vs. ExPASy Swiss-Prot
Match: LPAT2_BRAOL (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica oleracea GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 75/114 (65.79%), Postives = 87/114 (76.32%), Query Frame = -3
Query:  369 WCRDTFVAKDALLDKHNAEDTFSDQECQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPKNSKEPEQTTQ 710
            WCRD FVAKDALLDKH A DTF  Q+ Q I RP KSL VV+SWA L+  G +KFL WS+L SS KGIA SA GLGI+T+ MQILIR SQSERSTPAKV P+KPK+  +   ++Q
Sbjct:  270 WCRDQFVAKDALLDKHIAADTFPGQKEQNIDRPIKSLAVVVSWACLLTLGAMKFLHWSNLFSSLKGIALSALGLGIITLCMQILIRSSQSERSTPAKVAPAKPKDKHQSGSSSQ 383          
BLAST of CN182089 vs. ExPASy Swiss-Prot
Match: LPAT_MAIZE (1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 54/104 (51.92%), Postives = 78/104 (75.00%), Query Frame = -3
Query:  399 WCRDTFVAKDALLDKHNAEDTFSDQECQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPK 710
            WC+D FVAKDALLDKH A  TF D+E + I RP KSLLV + W+ L++FG ++F +W+ LLS+W+G+AF+A G+ +VT +M + I FSQ+ERS+ A+   ++ K
Sbjct:  270 WCKDIFVAKDALLDKHLATGTF-DEEIRPIGRPVKSLLVTLFWSCLLLFGAIEFFKWTQLLSTWRGVAFTAAGMALVTGVMHVFIMFSQAERSSSARAARNRVK 372          
BLAST of CN182089 vs. ExPASy Swiss-Prot
Match: LPAT3_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=LPAT3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = -3
Query:  420 WCRDTFVAKDALLDKHNAEDTFSDQECQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAK 710
            WC+D F+ KDA L+K+  +D FSD E  +I RP K L+VVI W   ++FG  K LQW S+++SWK I    F L I T+ MQILI+ S+S+RSTPAK
Sbjct:  270 WCQDLFITKDAQLEKYFTKDVFSDLEVHQINRPIKPLIVVIIWLGFLVFGGFKLLQWLSIVASWKIILLFVFFLVIATITMQILIQSSESQRSTPAK 366          
The following BLAST results are available for this feature:
BLAST of CN182089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LPAT2_ARATH8.308e-3866.671-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRANA1.085e-3767.541-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRAOL1.326e-3565.791-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT_MAIZE5.586e-2651.921-acyl-sn-glycerol-3-phosphate acyltransferase PLS... [more]
LPAT3_ARATH1.288e-2252.581-acyl-sn-glycerol-3-phosphate acyltransferase 3 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182089 ID=CN182089; Name=CN182089; organism=Citrus sinensis; type=EST; length=712bp
GAGGGGCAACGAAAGCAGCATCTTAGAATTTCAATGCTCCGGTGAAGTAA
AAATGGTCAAACGACAACTAAAAGTATCATGAGGTCTAGCTAATCGGAGC
ACTGCTAGAACAGCCAGTTTTAAATACAGTCTATACAAAATTACCCTGAT
TAACCAGCAAATAATGAATTGATGTGCTTTACAAACTGCGTCACACCGGT
ATCAAAGCCATAGCTAGACATGAATTTGAAACAGAAATGCACGACTAAGT
TACTCGAAGTAGATCTCGTAACCTACATGTATCATAAGTTCGCAAAAATA
TAGTTGTCTATGAGTTTCCTCTTGCACCAAAAACTTGAGTATCAAGCACT
GATTTACCGTTGTTTGTCTTGTGTGGTCTGCTCCGGCTCTTTGCTGTTCT
TGGGCTTTGATGGGACGACCTTGGCAGGGGTAGAACGCTCTGACTGGGAA
AAGCGAATTAAGATCTGCATCAGAACGGTGACAATACCCAAGCCAAATGC
CGAAAATGCAATGCCCTTCCATGAGGATAAAAGTGAAGACCACTGAAGAA
ACTTCAGAACCCCAAATATTACCAGAGATGCCCAGGAGATAACGACCAGA
AGTGATTTTTTTGGCCGGGGAATTTCCTGGCACTCTTGGTCACTAAATGT
GTCTTCTGCATTATGTTTGTCCAAAAGTGCATCCTTGGCCACGAACGTAT
CTCTACACCATT
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