CN182069

Overview
NameCN182069
Unique NameCN182069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182069_ssr261 microsatellite CN182069_ssr261:261..275. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig760 contig Csv1_Contig760:115..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.642e-53
Identity = 114/152 (75.00%), Postives = 115/152 (75.66%), Query Frame = 3
Query:   15 MFGIAPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKCK 467
            MFG  PKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDVIHPL VSLEDLYNGTSKKLSLS NVIC+KCK
Sbjct:    1 MFG-RPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICSKCK 150          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 6.239e-53
Identity = 105/152 (69.08%), Postives = 113/152 (74.34%), Query Frame = 3
Query:   15 MFGIAPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKCK 467
            MFG APKKSDNTKYYE+LGVSKNA+ +DLKKAYRKAAIKNHPD GGDPEKFKE+ QAYEVL+DPEKREIYDQYGE+ LKE        HDPFDI                        EDV+HPL VSLEDLYNGTSKKLSLS NV+CTKCK
Sbjct:    1 MFGRAPKKSDNTKYYEVLGVSKNATPEDLKKAYRKAAIKNHPDKGGDPEKFKEIGQAYEVLNDPEKREIYDQYGEEGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSRNVLCTKCK 152          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.456e-50
Identity = 102/151 (67.55%), Postives = 111/151 (73.51%), Query Frame = 3
Query:   15 MFGIAPKKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKC 464
            MFG APKKSD+T+YYEILGV K+AS +DLKKAY+KAAIKNHPD GGDPEKFKELA AYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPL VSLEDL+ GT+KKLSLS NVIC+KC
Sbjct:    1 MFGRAPKKSDSTRYYEILGVPKDASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGMHDPFDIFQSFFGGSPFGGVGSSRGRRQRRGEDVVHPLKVSLEDLFTGTTKKLSLSRNVICSKC 151          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.879e-49
Identity = 101/151 (66.89%), Postives = 109/151 (72.19%), Query Frame = 3
Query:   15 MFGIAP-KKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKC 464
            MFG  P KKSDNTK+YEILGV K+AS +DLKKAY+KAAIKNHPD GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                       EDV+HPL VSLED+Y GT KKLSLS N +C+KC
Sbjct:    1 MFGRGPSKKSDNTKFYEILGVPKSASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGPFGGNTSRQRRQRRGEDVVHPLKVSLEDVYLGTMKKLSLSRNALCSKC 151          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 8.726e-47
Identity = 98/152 (64.47%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   15 MFGIAP-KKSDNTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKC 464
            MFG  P +KSDNTK+YEILGV K A+ +DLKKAY+KAAIKNHPD GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPL VSLED+Y GT+KKLSLS   +C+KC
Sbjct:    1 MFGRGPSRKSDNTKFYEILGVPKTAAPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGSGGHPFGSHSRGRRQRRGEDVVHPLKVSLEDVYLGTTKKLSLSRKALCSKC 152          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.794e-42
Identity = 90/130 (69.23%), Postives = 94/130 (72.31%), Query Frame = 3
Query:   78 KNASQDDLKKAYRKAAIKNHPD*GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDI-XXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKC 464
            KNAS DDLKKAYRKAAIKNHPD GGDPEKFKELAQAY+VLSDPEKREIYDQYGEDALKE        HDPFDI                        EDV+HPL VSLE+LYNGTSKKLSLS NVIC+KC
Sbjct:    1 KNASPDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGDHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKC 130          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.400e-28
Identity = 69/141 (48.94%), Postives = 88/141 (62.41%), Query Frame = 3
Query:   48 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKCK 467
            T+YY+ILGV  +AS +++KKAYRK A+K HPD   D  EKFK ++QAYEVLSDP+KR+IYDQ GE A+KE          P DI                       ++V+H L V+LEDLYNG +KKL+L  NVIC KC+
Sbjct:    5 TQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSFSSPMDI------FDMFFGGGGRMTRERRGKNVVHQLSVTLEDLYNGITKKLALQKNVICEKCE 139          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.400e-28
Identity = 68/141 (48.23%), Postives = 88/141 (62.41%), Query Frame = 3
Query:   48 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKCK 467
            T+YY+ILGV  +AS +++KKAYRK A+K HPD   D  EKFK ++QAYEVLSDP+KR++YDQ GE A+KE          P DI                       ++V+H L V+LEDLYNG +KKL+L  NVIC KC+
Sbjct:    5 TQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGEQAIKEGGSGSPSFSSPMDI------FDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCE 139          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   45 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKC 464
            +TK Y+ILGV   AS+++LKKAYRK A + HPD   +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPL VSLEDLYNG + KL LS NV+C+ C
Sbjct:    6 DTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSAC 146          
BLAST of CN182069 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   45 NTKYYEILGVSKNASQDDLKKAYRKAAIKNHPD*GGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPL*VSLEDLYNGTSKKLSLSPNVICTKC 464
            +TK Y+ILGV   AS+++LKKAYRK A + HPD   +  +KFKE++ AYEVLS+PEKRE+YD+YGE  L+E         D F                         ED++HPL VSLEDLYNG + KL LS NV+C+ C
Sbjct:    6 DTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSAC 146          
The following BLAST results are available for this feature:
BLAST of CN182069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJH_CUCSA1.642e-5375.00DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH2_ALLPO6.239e-5369.08DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNJH_ATRNU6.456e-5067.55DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNAJ3_ARATH1.879e-4966.89Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNAJ2_ARATH8.726e-4764.47Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
DNJH1_ALLPO3.794e-4269.23DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNJA4_MOUSE1.400e-2848.94DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN1.400e-2848.23DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
DNJA2_RAT2.640e-2746.81DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA2_MOUSE2.640e-2746.81DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182069 ID=CN182069; Name=CN182069; organism=Citrus sinensis; type=EST; length=468bp
TTTAGTACAAGAAGATGTTCGGAATAGCGCCAAAGAAAAGCGATAACACA
AAGTACTATGAGATTCTCGGAGTCTCGAAAAACGCTTCGCAAGATGATCT
GAAGAAGGCTTATAGGAAAGCCGCCATCAAAAACCATCCTGACTAGGGCG
GTGATCCTGAGAAGTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAGT
GACCCAGAGAAGCGTGAAATATATGATCAATACGGCGAGGATGCGCTTAA
AGAGGGAATGGGTGGTGGTGGTGGTGCCCATGACCCATTCGACATATTCC
AATCCTTCTTCGGTGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGA
AGGCAAAGGAGGGGAGAGGACGTAATCCATCCCCTCTAGGTTTCGTTGGA
GGATCTGTACAATGGGACATCTAAGAAGCTCTCGCTCTCCCCCAATGTAA
TCTGCACCAAGTGCAAAG
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