CN182027

Overview
NameCN182027
Unique NameCN182027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182027_ssr402 microsatellite CN182027_ssr402:402..413. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:533..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.248e-79
Identity = 144/173 (83.24%), Postives = 150/173 (86.71%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 523
            VRFSP+T QPTIVSASWDRTVKVWNL+NCKLR TLAGH+GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSPNRYWLCAATE SIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV+RVWGIGRY
Sbjct:  155 VRFSPSTPQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKV--IYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 325          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 7.247e-79
Identity = 143/173 (82.66%), Postives = 150/173 (86.71%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 523
            VRFSPNTLQPTIVSASWD+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCFSPNRYWLCAATE  IKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  156 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.236e-78
Identity = 144/173 (83.24%), Postives = 149/173 (86.13%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 523
            VRFSP+TLQPTIVSASWDRTVKVWNL+NCKLR TLAGH GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG++IHALCFSP+RYWLCAATEQSIKIWDLESKSIVEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGV RVW IGRY
Sbjct:  155 VRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATSGGGNANKKKV--IYCTSLNWSADGSTLFSGYTDGVARVWAIGRY 325          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.976e-77
Identity = 140/173 (80.92%), Postives = 150/173 (86.71%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 523
            VRFSPNTLQPTIVSAS D+TVKVWNLSNCKLR+TLAGHTGYV+TVAVSPDGSLCASGGKDGV+LLWDLAEGK+LYSL+A +VIHALCF+PNRYWLCAATEQ IKIWDLESK++VEDLKVDL                    IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY
Sbjct:  156 VRFSPNTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFTPNRYWLCAATEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKV-IYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 327          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.973e-76
Identity = 136/173 (78.61%), Postives = 148/173 (85.55%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 523
            VRFSPN LQPTIVS SWDRTVK+WNL+NCKLRATLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESK+IV+DLKVDL                    IYCTSL WSADGSTLFSGYTDG+IRVWGIGR+
Sbjct:  156 VRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKV--IYCTSLGWSADGSTLFSGYTDGLIRVWGIGRF 326          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.794e-76
Identity = 136/173 (78.61%), Postives = 147/173 (84.97%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 523
            VRFSPN LQPTIVS SWDRTVK+WNL+NCKLR TLAGHTGYVNT AVSPDGSLCASGGKDGVILLWDLAEGK+LYSL++G++IH+LCFSPNRYWLCAATE SIKIWDLESKSIV+DLKVDL                    IYCTSL+WSADGSTLFSGYTDG+IRVWGI RY
Sbjct:  156 VRFSPNNLQPTIVSGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKV--IYCTSLSWSADGSTLFSGYTDGLIRVWGIDRY 326          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_ORYSJ (Guanine nucleotide-binding protein subunit beta-like protein OS=Oryza sativa subsp. japonica GN=Os01g0686800 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.879e-69
Identity = 124/173 (71.68%), Postives = 138/173 (79.77%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 523
            VRFSPNT QPTIVS SWDRTVKVWNL+NCKLR  L GH GYVN VAVSPDGSLCASGGKDGV LLWDLAEGKRLYSLDAG++IH+LCFSPNRYWLCAAT+ SIKIWDLESK IV+DLK ++                    +YCTSLNWSADGSTL++GYTDG IR++ I  +
Sbjct:  171 VRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQM-------------LYCTSLNWSADGSTLYAGYTDGTIRIYKISGF 330          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.042e-64
Identity = 117/171 (68.42%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 517
            VRFSP T  P IVS  WD+ VKVWNL+NCKL+  L GH GYVNTV VSPDGSLCASGGKDG+ +LWDLAEGKRLYSLDAG VIH LCFSPNRYWLCAAT+ SIKIWDLESKSIV+DL+ +                      YC SL WSADGSTL+SGYTDG IRVW +G
Sbjct:  156 VRFSPMTTNPIIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIVDDLRPEFNITSKKAQVP-----------YCVSLAWSADGSTLYSGYTDGQIRVWAVG 315          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 105/170 (61.76%), Postives = 122/170 (71.76%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
BLAST of CN182027 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 105/170 (61.76%), Postives = 122/170 (71.76%), Query Frame = 2
Query:    5 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSADGSTLFSGYTDGVIRVWGI 514
            VRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WSADG TLF+GYTD ++RVW +
Sbjct:  154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312          
The following BLAST results are available for this feature:
BLAST of CN182027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GBLP_MEDSA4.248e-7983.24Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH7.247e-7982.66Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_SOYBN1.236e-7883.24Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA3.976e-7780.92Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL1.973e-7678.61Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_TOBAC9.794e-7678.61Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ORYSJ8.879e-6971.68Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE5.042e-6468.42Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_RAT4.571e-5761.76Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG4.571e-5761.76Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182027 ID=CN182027; Name=CN182027; organism=Citrus sinensis; type=EST; length=702bp
GAGGGTTAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCT
CGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGG
GCTACTCTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCC
GGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGT
GGGATTTGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTC
ATTCACGCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGAC
TGAGCAGAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGG
ATCTTAAGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACC
GCCACCACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTG
GAGTGCTGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCA
GAGTCTGGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAACT
GCTGTTCTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTC
AGACCTATTTAAGATTTAAGATTTTGTTCAAAATGTTTTTAAGGATATTT
TGTTCTCTTTATTTGGATCTTATATGGCTTTGAAGCCTCTGCTGTTTTGG
TT
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