CN188848
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2) HSP 1 Score: 306.22 bits (783), Expect = 7.626e-83 Identity = 141/195 (72.31%), Postives = 171/195 (87.69%), Query Frame = 3 Query: 3 CPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587 CPMYA LCS+LN+ LP FPS+EPGGK+ITFKR+LLN+CQEAFEGAD+ R EI +T P+QEME+ D+ER+ KLRTLGNIRLIGELLK KMVPE+IVHHIV+ELL +D K CP EE+VEAICQFFNTIGKQLDENPKSRR+ND YF +++EL + QL PR +FM+ D++DLR+NNWVPRR E+KAKT++EIH+EA Sbjct: 262 CPMYAQLCSELNDNLPTFPSEEPGGKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEMEKRDKERIFKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQFFNTIGKQLDENPKSRRINDTYFVQIRELVANPQLTPRSKFMVRDLIDLRSNNWVPRRAEIKAKTISEIHTEA 456
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 7.237e-33 Identity = 82/200 (41.00%), Postives = 120/200 (60.00%), Query Frame = 3 Query: 3 CPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQER-----LVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587 C MYA C L+ LP F + G+ ITFKR+LLN CQE FE + E + A E ++E+ ++ER V+ R LGNIRLIGEL K +M+ E+I+H +Q+LL + P EEN+EA+C+ +TIG +D N K++ D YF ++K L+ +L R+RFM+ + +DLR N W R + K + E+H +A Sbjct: 1145 CEMYADFCFHLSGALPDFNEN---GEKITFKRLLLNKCQEEFERGEKEEEEASRV-AEEGQVEQTEEEREEKRLQVRRRMLGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQD--PHEENIEALCKLMSTIGVMIDHN-KAKFQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDA 1337
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_HUMAN (Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27 Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = 3 Query: 57 PSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587 P+ E + F+++LLN CQ+ FE D E+ E + +ER + + R+LGNI+ IGEL K KM+ E I+H V +LL+N EE++E +C+ TIGK LD R+ D YF++++++ + R+RFM+ DVLDLR +NWVPRR + KT+ +IH EA Sbjct: 829 PTTEKPTVTVNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEA 1010
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G3_MOUSE (Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27 Identity = 74/203 (36.45%), Postives = 113/203 (55.67%), Query Frame = 3 Query: 12 YALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRHMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587 YA +C L P +D+PG + F+++LLN CQ+ FE + + E+ +APE+ D+ K R++GNI+ IGEL K KM+ E I+H V +LL+N EE++E +C+ TIGK LD R+ D YF++++++ + R+RFM+ DV+DLR NWV RR + KT+ +IH EA Sbjct: 804 YANMCRCLVTLKVPM-ADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 998
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G3_HUMAN (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27 Identity = 74/203 (36.45%), Postives = 113/203 (55.67%), Query Frame = 3 Query: 12 YALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRHMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587 YA +C L P +D+PG + F+++LLN CQ+ FE + + E+ +APE+ D+ K R++GNI+ IGEL K KM+ E I+H V +LL+N EE++E +C+ TIGK LD R+ D YF++++++ + R+RFM+ DV+DLR NWV RR + KT+ +IH EA Sbjct: 809 YANMCRCLVTLKVPM-ADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 1003
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_MOUSE (Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27 Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = 3 Query: 57 PSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587 P+ E + F+++LLN CQ+ FE D E+ E + +ER + + R+LGNI+ IGEL K KM+ E I+H V +LL+N EE++E +C+ TIGK LD R+ D YF++++++ + R+RFM+ DVLDLR +NWVPRR + KT+ +IH EA Sbjct: 832 PTTEKPTVTVNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFAKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEA 1013
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_RABIT (Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.847e-26 Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 3 Query: 84 ITFKRILLNHCQEAFEGADNTRAEI---------RHMTAPEQEM--ERMDQERLVKLR-TLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587 + F+++LLN CQ+ FE D E+ TA E+E E +++ R + R +LGNI+ IGEL K KM+ E I+H V +LL +D EE++E +C+ TIGK LD R+ D YF++++++ + R+RFM+ DVLDLR +NWVPRR + KT+ +IH EA Sbjct: 642 VNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERERLKEELEEARDIARRCSLGNIKFIGELFKLKMLTEAIMHDCVVKLLRHD------EESLEFLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEA 813
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G_SCHPO (Eukaryotic translation initiation factor 4 gamma OS=Schizosaccharomyces pombe GN=tif471 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.790e-23 Identity = 67/181 (37.02%), Postives = 98/181 (54.14%), Query Frame = 3 Query: 60 SDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQERLV----KLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRRE-EMKAKTVTEIHSEA 587 +++P + F++ LL+ CQE FE +A + A E E+ M E V K R LG +R IGEL K M+ E+I+H ++ LL N T P EE +E++C+ T+G +D K DVY R++ +T L R++FM+ DV+D R N W + E E KT+ EIH EA Sbjct: 1092 NNQPVRGGLLFRKYLLSRCQEDFERG--WKANLPSGKAGEAEI--MSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIMHECIKRLLGN--VTDPEEEEIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLPSRIKFMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEEA 1266
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22 Identity = 66/205 (32.20%), Postives = 113/205 (55.12%), Query Frame = 3 Query: 9 MYALLCSDLNEKLP----PFPSDEPGGKD-ITFKRILLNHCQEAFEGAD---NTRAEIRHMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAE--ENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRRE--EMKAKTVTEIHSEA 587 +YA LC L E P P +PG K TF+R+L++ Q+ FE + + + PE+E +Q + K++ LGNI+ IGEL K ++ E I+H ++ LLE + + E++E +CQ T+G +LD +++ + D YF+R+ L +L R+RF++ D ++LR ++WVPR+ + KT+ +I +A Sbjct: 131 LYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPLLPEEE----EQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLQDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDA 330
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G2_PONAB (Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22 Identity = 66/205 (32.20%), Postives = 113/205 (55.12%), Query Frame = 3 Query: 9 MYALLCSDLNEKLP----PFPSDEPGGKD-ITFKRILLNHCQEAFEGAD---NTRAEIRHMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAE--ENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRRE--EMKAKTVTEIHSEA 587 +YA LC L E P P +PG K TF+R+L++ Q+ FE + + + PE+E +Q + K++ LGNI+ IGEL K ++ E I+H ++ LLE + + E++E +CQ T+G +LD +++ + D YF+R+ L +L R+RF++ D ++LR ++WVPR+ + KT+ +I +A Sbjct: 131 LYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPLLPEEE----EQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDA 330 The following BLAST results are available for this feature:
BLAST of CN188848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188848 ID=CN188848; Name=CN188848; organism=Citrus sinensis; type=EST; length=587bpback to top |