CN188848

Overview
NameCN188848
Unique NameCN188848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 7.626e-83
Identity = 141/195 (72.31%), Postives = 171/195 (87.69%), Query Frame = 3
Query:    3 CPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587
            CPMYA LCS+LN+ LP FPS+EPGGK+ITFKR+LLN+CQEAFEGAD+ R EI  +T P+QEME+ D+ER+ KLRTLGNIRLIGELLK KMVPE+IVHHIV+ELL +D K CP EE+VEAICQFFNTIGKQLDENPKSRR+ND YF +++EL  + QL PR +FM+ D++DLR+NNWVPRR E+KAKT++EIH+EA
Sbjct:  262 CPMYAQLCSELNDNLPTFPSEEPGGKEITFKRVLLNNCQEAFEGADSLRVEIASLTGPDQEMEKRDKERIFKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGSDKKACPDEEHVEAICQFFNTIGKQLDENPKSRRINDTYFVQIRELVANPQLTPRSKFMVRDLIDLRSNNWVPRRAEIKAKTISEIHTEA 456          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.237e-33
Identity = 82/200 (41.00%), Postives = 120/200 (60.00%), Query Frame = 3
Query:    3 CPMYALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQER-----LVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587
            C MYA  C  L+  LP F  +   G+ ITFKR+LLN CQE FE  +    E   + A E ++E+ ++ER      V+ R LGNIRLIGEL K +M+ E+I+H  +Q+LL  +    P EEN+EA+C+  +TIG  +D N K++   D YF ++K L+   +L  R+RFM+ + +DLR N W  R +    K + E+H +A
Sbjct: 1145 CEMYADFCFHLSGALPDFNEN---GEKITFKRLLLNKCQEEFERGEKEEEEASRV-AEEGQVEQTEEEREEKRLQVRRRMLGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQD--PHEENIEALCKLMSTIGVMIDHN-KAKFQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDA 1337          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_HUMAN (Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.479e-27
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = 3
Query:   57 PSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587
            P+ E     + F+++LLN CQ+ FE  D    E+      E +     +ER            + + R+LGNI+ IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DVLDLR +NWVPRR +   KT+ +IH EA
Sbjct:  829 PTTEKPTVTVNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEA 1010          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G3_MOUSE (Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 74/203 (36.45%), Postives = 113/203 (55.67%), Query Frame = 3
Query:   12 YALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRHMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587
            YA +C  L     P  +D+PG   + F+++LLN CQ+ FE         +  + E+   +APE+     D+    K     R++GNI+ IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DV+DLR  NWV RR +   KT+ +IH EA
Sbjct:  804 YANMCRCLVTLKVPM-ADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 998          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G3_HUMAN (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 74/203 (36.45%), Postives = 113/203 (55.67%), Query Frame = 3
Query:   12 YALLCSDLNEKLPPFPSDEPGGKDITFKRILLNHCQEAFEGA-------DNTRAEIRHMTAPEQEMERMDQERLVK----LRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587
            YA +C  L     P  +D+PG   + F+++LLN CQ+ FE         +  + E+   +APE+     D+    K     R++GNI+ IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DV+DLR  NWV RR +   KT+ +IH EA
Sbjct:  809 YANMCRCLVTLKVPM-ADKPGNT-VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEA 1003          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_MOUSE (Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = 3
Query:   57 PSDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQER------------LVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587
            P+ E     + F+++LLN CQ+ FE  D    E+      E +     +ER            + + R+LGNI+ IGEL K KM+ E I+H  V +LL+N       EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DVLDLR +NWVPRR +   KT+ +IH EA
Sbjct:  832 PTTEKPTVTVNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD-----EESLECLCRLLTTIGKDLDFAKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEA 1013          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G1_RABIT (Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.847e-26
Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 3
Query:   84 ITFKRILLNHCQEAFEGADNTRAEI---------RHMTAPEQEM--ERMDQERLVKLR-TLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRREEMKAKTVTEIHSEA 587
            + F+++LLN CQ+ FE  D    E+            TA E+E   E +++ R +  R +LGNI+ IGEL K KM+ E I+H  V +LL +D      EE++E +C+   TIGK LD      R+ D YF++++++    +   R+RFM+ DVLDLR +NWVPRR +   KT+ +IH EA
Sbjct:  642 VNFRKLLLNRCQKEFE-KDKDDDEVFEKKQKEMDEAATAEERERLKEELEEARDIARRCSLGNIKFIGELFKLKMLTEAIMHDCVVKLLRHD------EESLEFLCRLLTTIGKDLDFEKAKPRM-DQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEA 813          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G_SCHPO (Eukaryotic translation initiation factor 4 gamma OS=Schizosaccharomyces pombe GN=tif471 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.790e-23
Identity = 67/181 (37.02%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   60 SDEPGGKDITFKRILLNHCQEAFEGADNTRAEIRHMTAPEQEMERMDQERLV----KLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAEENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRRE-EMKAKTVTEIHSEA 587
            +++P    + F++ LL+ CQE FE     +A +    A E E+  M  E  V    K R LG +R IGEL K  M+ E+I+H  ++ LL N   T P EE +E++C+   T+G  +D   K     DVY  R++ +T    L  R++FM+ DV+D R N W  + E E   KT+ EIH EA
Sbjct: 1092 NNQPVRGGLLFRKYLLSRCQEDFERG--WKANLPSGKAGEAEI--MSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIMHECIKRLLGN--VTDPEEEEIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLPSRIKFMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEEA 1266          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 66/205 (32.20%), Postives = 113/205 (55.12%), Query Frame = 3
Query:    9 MYALLCSDLNEKLP----PFPSDEPGGKD-ITFKRILLNHCQEAFEGAD---NTRAEIRHMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAE--ENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRRE--EMKAKTVTEIHSEA 587
            +YA LC  L E  P    P    +PG K   TF+R+L++  Q+ FE      +   +  +   PE+E    +Q  + K++ LGNI+ IGEL K  ++ E I+H  ++ LLE   +    +  E++E +CQ   T+G +LD   +++ + D YF+R+  L    +L  R+RF++ D ++LR ++WVPR+   +   KT+ +I  +A
Sbjct:  131 LYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPLLPEEE----EQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLQDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDA 330          
BLAST of CN188848 vs. ExPASy Swiss-Prot
Match: IF4G2_PONAB (Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.158e-22
Identity = 66/205 (32.20%), Postives = 113/205 (55.12%), Query Frame = 3
Query:    9 MYALLCSDLNEKLP----PFPSDEPGGKD-ITFKRILLNHCQEAFEGAD---NTRAEIRHMTAPEQEMERMDQERLVKLRTLGNIRLIGELLKHKMVPEEIVHHIVQELLENDGKTCPAE--ENVEAICQFFNTIGKQLDENPKSRRVNDVYFSRLKELTTHSQLVPRLRFMIHDVLDLRANNWVPRRE--EMKAKTVTEIHSEA 587
            +YA LC  L E  P    P    +PG K   TF+R+L++  Q+ FE      +   +  +   PE+E    +Q  + K++ LGNI+ IGEL K  ++ E I+H  ++ LLE   +    +  E++E +CQ   T+G +LD   +++ + D YF+R+  L    +L  R+RF++ D ++LR ++WVPR+   +   KT+ +I  +A
Sbjct:  131 LYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPLLPEEE----EQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHE-RAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDA 330          
The following BLAST results are available for this feature:
BLAST of CN188848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
IF41_WHEAT7.626e-8372.31Eukaryotic initiation factor iso-4F subunit p82-34... [more]
IF4G1_ARATH7.237e-3341.00Eukaryotic translation initiation factor 4G OS=Ara... [more]
IF4G1_HUMAN3.479e-2737.04Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G3_MOUSE4.544e-2736.45Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G3_HUMAN4.544e-2736.45Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G1_MOUSE7.751e-2737.04Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G1_RABIT3.847e-2639.44Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G_SCHPO6.790e-2337.02Eukaryotic translation initiation factor 4 gamma O... [more]
IF4G2_RABIT1.158e-2232.20Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_PONAB1.158e-2232.20Eukaryotic translation initiation factor 4 gamma 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188848 ID=CN188848; Name=CN188848; organism=Citrus sinensis; type=EST; length=587bp
AGTGTCCCATGTATGCACTTTTATGCTCTGACCTTAACGAGAAGCTTCCT
CCATTTCCTTCTGATGAGCCTGGTGGGAAAGATATCACCTTTAAGCGGAT
CCTTTTGAATCATTGCCAGGAGGCATTTGAAGGTGCTGACAACACAAGGG
CAGAAATTAGGCACATGACTGCTCCTGAACAAGAAATGGAACGTATGGAT
CAAGAACGACTGGTTAAGCTGCGGACCTTGGGGAACATACGCCTTATTGG
GGAACTTTTGAAGCATAAGATGGTGCCTGAAGAGATTGTCCACCATATTG
TTCAGGAGCTTTTGGAGAATGATGGTAAAACATGCCCAGCTGAGGAGAAT
GTTGAGGCAATATGTCAATTTTTTAACACCATTGGAAAGCAGCTGGATGA
GAATCCTAAATCAAGGCGAGTCAATGATGTTTATTTTAGTCGATTGAAGG
AATTAACCACACATTCGCAACTTGTGCCACGTTTGAGGTTCATGATCCAT
GATGTTCTTGATCTGCGGGCCAACAACTGGGTTCCTCGGCGGGAAGAGAT
GAAAGCCAAGACCGTCACCGAAATTCACTCGGAGGCT
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