CN188844

Overview
NameCN188844
Unique NameCN188844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:590..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188844 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.119e-42
Identity = 71/127 (55.91%), Postives = 91/127 (71.65%), Query Frame = -1
Query:  318 NVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXPHAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 698
            N+A + +GKCGIA+E SY                    P   CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  334 NIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CN188844 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.119e-42
Identity = 71/114 (62.28%), Postives = 84/114 (73.68%), Query Frame = -1
Query:  339 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXPHAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 680
            +GKCGIA+E SY                    P  VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  331 SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CN188844 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 65/122 (53.28%), Postives = 77/122 (63.11%), Query Frame = -1
Query:  315 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXPHAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 680
            +G CG+A+E SY                    P   CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  220 SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CN188844 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 62/119 (52.10%), Postives = 72/119 (60.50%), Query Frame = -1
Query:  342 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXPHA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 680
            TGKCGIAM ASY                    P        VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  344 TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CN188844 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 51/118 (43.22%), Postives = 61/118 (51.69%), Query Frame = -1
Query:  339 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXPHAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 680
            TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  361 TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CN188844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD21A_ARATH4.119e-4255.91Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ4.119e-4262.28Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSPL_SOLLC2.586e-3653.28Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ4.272e-3152.10Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ4.575e-2543.22Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006O08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188844 ID=CN188844; Name=CN188844; organism=Citrus sinensis; type=EST; length=698bp
ATCAATTCATAAAAGCCTCCGCTGAACGTTTAAAGGGATTTGGTGGAGGA
CATTGGAAATAGATAACACCAATTTGTTTGTGCATTGTTCGGATTCAACG
CAGATAGATAACTTACAACGCTATATACAAAACCAACGTCCCAATAAATA
TTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGAAATGAAATGCA
GTAAAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATATCT
TCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATTAA
GCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCAGG
GGTGCGTCGCAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGC
AGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGCTA
TAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGC
AAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAG
GGCAAGAGTAATAATTGTCACACACAGCATGAGGCTTTGTTGGAGATGGA
GGAGACGGTCCGGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGA
GGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTT
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