CX300703

Overview
NameCX300703
Unique NameCX300703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2648 contig Csv1_Contig2648:393..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA2_ARATH (Regulator of ribonuclease-like protein 2 OS=Arabidopsis thaliana GN=At5g16450 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.516e-35
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 2
Query:   20 EAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHP+KA+KKG+GE+ VP+ I GTRI DGEWLYADTDGIL+S+ ELSV
Sbjct:   87 QAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA1_ARATH (Regulator of ribonuclease-like protein 1 OS=Arabidopsis thaliana GN=At3g02770 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.633e-34
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 2
Query:   20 EAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +AQNNGWAGI+VNGCIRDVDEINGCDIGVRALASHP+KA+KKG+GE+ V + I GTRI DGEWLYADTDGIL+S+ ELSV
Sbjct:   87 QAQNNGWAGIIVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA3_ARATH (Regulator of ribonuclease-like protein 3 OS=Arabidopsis thaliana GN=At5g56260 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.292e-31
Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            AQNNGW+GIVVNGC+RDVDEIN CD+GVRAL S+P+K+ KKG GEK+VP+ IGGT I DGEWLYAD+DGILIS+ ELSV
Sbjct:   88 AQNNGWSGIVVNGCVRDVDEINDCDVGVRALGSNPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_BURM1 (Regulator of ribonuclease activity A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rraA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.295e-23
Identity = 45/78 (57.69%), Postives = 62/78 (79.49%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 256
            A+ NGWAGIVV+GC+RD  E+  C +GV ALA+HP K++K+G GE+ VP+T+ GTRI+ GEW+YAD DG+L+S   L+
Sbjct:   87 AEKNGWAGIVVHGCVRDAAELRECKVGVLALATHPRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSATSLT 164          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_PSEMY (Regulator of ribonuclease activity A OS=Pseudomonas mendocina (strain ymp) GN=rraA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.870e-22
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 2
Query:   11 IRHEAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 259
            +  +A  NGWAGIVV GCIRDVD I   D+GV+ALASHPMK +K+GIG+ +VP+T GG     GE+LYAD +GI++S   LS+
Sbjct:   78 LAEKAAKNGWAGIVVYGCIRDVDVIAQADLGVQALASHPMKTDKRGIGDLNVPVTFGGVTFKPGEYLYADNNGIIVSPQALSM 160          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_BURPS (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei GN=rraA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.583e-21
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 241
            A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   87 AEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_BURP6 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 668) GN=rraA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.583e-21
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 241
            A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   87 AEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_BURP1 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1710b) GN=rraA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.583e-21
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 241
            A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   87 AEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_BURP0 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1106a) GN=rraA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.583e-21
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 241
            A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   87 AEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CX300703 vs. ExPASy Swiss-Prot
Match: RRAA_BURMS (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain SAVP1) GN=rraA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.583e-21
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 2
Query:   23 AQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 241
            A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   87 AEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
The following BLAST results are available for this feature:
BLAST of CX300703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RRAA2_ARATH2.516e-3583.75Regulator of ribonuclease-like protein 2 OS=Arabid... [more]
RRAA1_ARATH3.633e-3481.25Regulator of ribonuclease-like protein 1 OS=Arabid... [more]
RRAA3_ARATH1.292e-3177.22Regulator of ribonuclease-like protein 3 OS=Arabid... [more]
RRAA_BURM11.295e-2357.69Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_PSEMY1.870e-2257.83Regulator of ribonuclease activity A OS=Pseudomona... [more]
RRAA_BURPS1.583e-2157.53Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP61.583e-2157.53Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP11.583e-2157.53Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP01.583e-2157.53Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURMS1.583e-2157.53Regulator of ribonuclease activity A OS=Burkholder... [more]

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Properties
Property NameValue
Genbank descriptionC08001C12SK PhyRootSw1 Citrus sinensis cDNA clone C08001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300703 ID=CX300703; Name=CX300703; organism=Citrus sinensis; type=EST; length=401bp
CTCGTGCCGAATTCGGCACGAGGCCCAGAATAACGGATGGGCTGGAATAG
TTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGGGTGTGATATT
GGTGTGAGAGCACTGGCTTCTCATCCCATGAAAGCCAATAAGAAGGGGAT
TGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGAATCAGTGATG
GCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTCTCGGGCAGAG
TTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTGCAGGTGCTTT
TCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTTTCCCGAGCCC
ATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAATCTATCCGAC
T
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