CN181963

Overview
NameCN181963
Unique NameCN181963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:1212..1936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.931e-67
Identity = 124/140 (88.57%), Postives = 125/140 (89.29%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:   70 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.931e-67
Identity = 124/140 (88.57%), Postives = 125/140 (89.29%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDDDAF+
Sbjct:   70 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.328e-66
Identity = 123/140 (87.86%), Postives = 124/140 (88.57%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+QPLPDDDDDAFE
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.328e-66
Identity = 122/140 (87.14%), Postives = 124/140 (88.57%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID              ASQPLPDDDD+ F+
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.347e-66
Identity = 123/140 (87.86%), Postives = 123/140 (87.86%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              ASQPLPDDDDD FE
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.265e-65
Identity = 121/140 (86.43%), Postives = 123/140 (87.86%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID               +QPLPDDDD+AFE
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 2.157e-65
Identity = 121/140 (86.43%), Postives = 123/140 (87.86%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV +D              A+QPLPDDDDDAFE
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.806e-65
Identity = 121/140 (86.43%), Postives = 123/140 (87.86%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEV ID              A+QPLPDDDD+AFE
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.071e-64
Identity = 120/140 (85.71%), Postives = 122/140 (87.14%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVE+PALAPPEV ID              A+QPLPDDDDD FE
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221
[Close]
BLAST of CN181963 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 120/140 (85.71%), Postives = 122/140 (87.14%), Query Frame = -2 
Query:  305 YYIHGQWAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXASQPLPDDDDDAFE 724
            YYIHGQ AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPPEVQID              A+  LPDDDD+AFE
Sbjct:   82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221
The following BLAST results are available for this feature:
BLAST of CN181963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RAN1B_LOTJA3.931e-6788.57GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA3.931e-6788.57GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN_VICFA3.328e-6687.86GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANA1_TOBAC3.328e-6687.14GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH4.347e-6687.86GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC1.265e-6586.43GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH2.157e-6586.43GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC4.806e-6586.43GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH1.071e-6485.71GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANB1_TOBAC3.115e-6485.71GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181963 ID=CN181963; Name=CN181963; organism=Citrus sinensis; type=EST; length=725bp
TGATGCGCCACTGGTTGGAACATACAAAACTTATGCATAAAAGTATTGGA
ATGGCATAATCCACGTCACTGAAACATCATTCCAGTAATAAGAAAACTCC
CAAAAAAAAACAAGCATAAAAAGAGTCTCCAACAAGTATCTAAAGGTACA
ACCTAACTACTATAATCCATTGTTCTCGATGGTCACCCCTACGCTGATAA
CCAAATCTCCGCCATGTGTTGAAAATTTCCAAAATAACAGCATTTTTAAG
TCAAGCAGCAGTATGAGAGGTTGCGCCTACACCCGTCCAAGCAGTTCCTC
TCTACTCAAATGCATCATCATCGTCATCAGGAAGAGGCTGGCTAGCTGCT
GCGGCAAGCTCGGCTTCATGTTGTTGCTGTGCAGCTAAGTCAATCTGTAC
TTCTGGAGGAGCGAGAGCAGGAGATTCCACGAAGTGCAAATTTGGGTCCC
CAGCAAGCTTCCTGGCAAGGTACAAGAAAGGTTTCTCAAAATTGTAGTTG
CTCTTGGCAGAAATCTCATAGTACTGTAGATTCTTCTTCCTGTGGAAGGT
AACCTGCTTTGCCTTGACTTGCCTATTCTTCACATCAACCTTGTTCCCAC
AGAGAACAATCGGTATATTTTCACACACCCGGCAAAGATCACGGTGCCAA
GTGGGAACATTCTTGTATGTCAATCGGGCAGTAACATCAAACATAATGAT
GGCCCATTGCCCATGGATGTAATAA
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