CN188794

Overview
NameCN188794
Unique NameCN188794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188794 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.174e-78
Identity = 159/222 (71.62%), Postives = 168/222 (75.68%), Query Frame = 2
Query:   17 RKKXXEIVTE*LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVAEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAIL 682
            RKK  EIV   LSLPDTN N LTRDHKTALDIAEGLP SEE+S IK+CLAR GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGI                                       RASFKIFFIFNA+ALFTSLAVVVVQITLVRGETKAEKRV EVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA L
Sbjct:  309 RKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAEL 530          
BLAST of CN188794 vs. ExPASy Swiss-Prot
Match: Y2168_ARATH (Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 82/227 (36.12%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   17 RKKXXEIVTE*LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE--LRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----RASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVAEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAI 679
            RK   +I +  L+     VNA+    +TA+D+A+ L  SE A EI + L   GA     + +  +   L++ V+ IK +V +QL Q  +TN+ V  I+KELRKLHRE +                                           R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+V  V+NKLMW A  CT  AF+A ++ VVG+ + W AI
Sbjct:  239 RKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAI 465          
BLAST of CN188794 vs. ExPASy Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 75/239 (31.38%), Postives = 113/239 (47.28%), Query Frame = 2
Query:   17 RKKXXEIVTE*LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD--------ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREG----------IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVAEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAI 679
            RK   EIV   L   + +  A+ +  +TALDIAE         EI   L + G   A  +             +L++TV++I  +VHTQLEQT RT + +  I+K + K+H EG          +                                       R  F IF +F++ ALF SLAVVVVQ ++V  E +A+K++  +INKLMW+A +  SVAF++ S++VVG + +  A+
Sbjct:  236 RKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAE----KTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAV 470          
The following BLAST results are available for this feature:
BLAST of CN188794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3236_ARATH1.174e-7871.62Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
Y2168_ARATH5.345e-3136.12Ankyrin repeat-containing protein At2g01680 OS=Ara... [more]
Y5262_ARATH2.659e-2231.38Ankyrin repeat-containing protein At5g02620 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188794 ID=CN188794; Name=CN188794; organism=Citrus sinensis; type=EST; length=683bp
GCGTTATGGAGNNANNAGGAAAAAANGAANAGAGATAGTGACCGAGTAGT
TATCCCTCCCTGACACCAATGTTAATGCACTAACCAGAGACCACAAAACA
GCTCTCGACATAGCTGAAGGGCTTCCCTCCTCAGAAGAAGCTTCAGAAAT
AAAGGACTGCCTTGCTCGCTGTGGTGCTGTCAGAGCTAATGAATTGAACC
AGCCAAGGGATGAGTTGAGAAAAACCGTGACTCAAATCAAGAAAGATGTT
CATACACAGCTTGAACAAACCAGAAGAACGAACAAAAATGTTCATAACAT
TTCTAAAGAGCTCAGGAAACTCCATCGCGAAGGCATCAACAATGCCACCA
ATTCAGTGACTGTGGTGGCTGTACTATTTGCCACGGTTGCTTTTGCAGCT
ATATTTACTGTGCCTGGCGGGGATGATGATCACGGGGTGGCTGTAGTCGT
CCGTCGTGCCTCTTTCAAAATCTTCTTCATTTTTAATGCAATAGCACTCT
TTACATCTTTAGCTGTTGTTGTTGTCCAAATCACTCTGGTCAGAGGTGAG
ACAAAAGCAGAGAAACGGGTGGCAGAGGTTATTAACAAGTTGATGTGGTT
AGCTTCGGTGTGCACCTCCGTGGCATTTATTGCCTCCTCTTACATAGTGG
TTGGCCGCAGACACGAGTGGGCTGCAATTTTGG
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