CN188793

Overview
NameCN188793
Unique NameCN188793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188793 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.835e-76
Identity = 158/231 (68.40%), Postives = 172/231 (74.46%), Query Frame = -3
Query:   96 GAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXKNARMRSGSNSWYPSDYSNSEIDRIYAL 788
            GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGI                                     V RASFKIFFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IMAGVLGTMTYY              K+AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct:  361 GALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590          
BLAST of CN188793 vs. ExPASy Swiss-Prot
Match: Y2168_ARATH (Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.683e-29
Identity = 81/226 (35.84%), Postives = 117/226 (51.77%), Query Frame = -3
Query:   96 LRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVR----RASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXKNARMRSGSNSW----YPSDYSN-SEIDRIYAL 746
            L++ V+ IK +V +QL Q  +TN+ V  I+KELRKLHRE +                                           R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+VV V+NKLMW A  CT  AF+A ++ VVG+ + W AI +T++G  I+ G L +M Y+              +  R  S S SW    + SD+ + S+ ++I AL
Sbjct:  307 LKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRIRRGSSKSFSWSYSHHVSDFEDESDFEKIIAL 532          
BLAST of CN188793 vs. ExPASy Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.646e-26
Identity = 67/186 (36.02%), Postives = 101/186 (54.30%), Query Frame = -3
Query:  222 ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREG----------IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYY 749
            +L++TV++I  +VHTQLEQT RT + +  I+K + K+H EG          +                                       R  F IF +F++ ALF SLAVVVVQ ++V  E +A+K+++ +INKLMW+A +  SVAF++ S++VVG + +  A+ VT +G LIM   LGTM Y+
Sbjct:  305 KLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYW 490          
The following BLAST results are available for this feature:
BLAST of CN188793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3236_ARATH1.835e-7668.40Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
Y2168_ARATH1.683e-2935.84Ankyrin repeat-containing protein At2g01680 OS=Ara... [more]
Y5262_ARATH8.646e-2636.02Ankyrin repeat-containing protein At5g02620 OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006M13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188793 ID=CN188793; Name=CN188793; organism=Citrus sinensis; type=EST; length=790bp
GCAGGGATGCCTGAATACTTCTTTACATACTTGTTCAGGATCCATATTTT
CTAAGTCTCTACAATCGGAATAATGTTGCAGACACACTCACATCAAAGGG
CATAAATTCGATCAATTTCTGAATTGGAGTAGTCAGAGGGATACCATGAG
TTGGATCCACTCCTCATCCTTGCATTCTTCTCCCTCTTCCTAATTGATCG
AACCCTCTTAGACTTCACCACATAATAAGTCATGGTGCCGAGGACTCCAG
CCATTATCAGTCCCCCAACAACTGTAACCAAAATTGCAGCCCACTCGTGT
CTGCGGCCAACCACTATGTAAGAGGAGGCAATAAATGCCACGGAGGTGCA
CACCGAAGCTAACCACATCAACTTGTTAATAACCTCCACCACCCGTTTCT
CTGCTTTTGTCTCACCTCTGACCAGAGTGATTTGGACAACAACAACAGCT
AAAGATGTAAAGAGTGCTATTGCATTAAAAATGAAGAAGATTTTGAAAGA
GGCACGACGGACGACTACAGCCACCCCGTGATCATCATCCCCGCCAGGCA
CAGTAAATATAGCTGCAAAAGCAACCGTGGCAAATAGTACAGCCACCACA
GTCACTGAATTGGTGGCATTGTTGATGCCTTCGCGATGGAGTTTCCTGAG
CTCTTTAGAAATGTTATGAACATTTTTGTTCGTTCTTCTGGTTTGTTCAA
GCTGTGTATGAACATCTTTCTTGATTTGAGTCACGGTTTTTCTCAACTCA
TCCCTTGGCTGGTTCAATTCATTAGCTCTGACAGCACCAC
back to top