CN188779

Overview
NameCN188779
Unique NameCN188779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188779 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.073e-19
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = -1
Query:  324 MSDTCGNCDCADRSQCVKKASSYAADFVETD 416
            MSDTCGNCDCAD++QCVKK SSY AD +ET+
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETE 31          

HSP 2 Score: 54.6842 bits (130), Expect = 4.073e-19
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -2
Query:  218 VVMDVQAAETEGNCKCGPTCACVNCTCG 301
            VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   37 VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN188779 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 9.324e-14
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = -1
Query:  324 MSDTCGNCDCADRSQCVKKASSYAADFVETD 416
            MSD CGNCDCAD SQCVKK +S   D VETD
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETD 29          

HSP 2 Score: 47.7506 bits (112), Expect = 9.324e-14
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = -2
Query:  221 VVMDVQAAETEGNCKCGPTCACVNCTC 301
            VVM V AAE+ G CKCG +C CVNCTC
Sbjct:   36 VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CN188779 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.575e-13
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -1
Query:  324 TCGNCDCADRSQCVKKASSYAADFVETD 407
            TCGNCDC D+SQCVKK +SY  D VET+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETE 30          

HSP 2 Score: 44.669 bits (104), Expect = 1.575e-13
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = -2
Query:  215 SFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 319
            S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   32 SYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CN188779 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.161e-12
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = -2
Query:  221 VVMDVQAAETEGNCKCGPTCACVNCTC 301
            V+MD  AAE  GNCKCGP+CACV+C C
Sbjct:   38 VIMDAPAAENGGNCKCGPSCACVDCKC 64          

HSP 2 Score: 41.5874 bits (96), Expect = 2.161e-12
Identity = 17/31 (54.84%), Postives = 20/31 (64.52%), Query Frame = -1
Query:  324 MSDTCGNCDCADRSQCVKKASSYAADFVETD 416
            MS  C NCDC+D SQC KK  S+    VET+
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETE 31          
BLAST of CN188779 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.739e-12
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = -1
Query:  324 MSDTCGNCDCADRSQCVKKASSYAADFVETD 416
            MSD CGNCDCAD+SQCVKK +SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 4.739e-12
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = -2
Query:  218 DVQAAETEGNCKCGPTCACVNCTCG 292
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN188779 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.739e-12
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = -1
Query:  324 MSDTCGNCDCADRSQCVKKASSYAADFVETD 416
            MSD CGNCDCAD+SQCVKK +SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 4.739e-12
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = -2
Query:  218 DVQAAETEGNCKCGPTCACVNCTCG 292
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN188779 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 7.998e-12
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = -2
Query:  218 VVMDVQAAETEGNCKCGPTCACVNCTCG 301
            V +D  AAE +G CKCG  C+CV+CTCG
Sbjct:   38 VFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          

HSP 2 Score: 45.0542 bits (105), Expect = 7.998e-12
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = -1
Query:  324 MSDTCGNCDCADRSQCVKKASSYAADFVETD 416
            MS  C NCDCAD +QCVKK +SY    VET+
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETE 31          
The following BLAST results are available for this feature:
BLAST of CN188779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA4.073e-1977.42Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE9.324e-1474.19Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC1.575e-1371.43Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV2.161e-1270.37Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ4.739e-1267.74Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI4.739e-1267.74Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO7.998e-1260.71Metallothionein-like protein type 3 OS=Malus domes... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188779 ID=CN188779; Name=CN188779; organism=Citrus sinensis; type=EST; length=488bp
ATTANANGANTATGAAGAAGGAAACCCCTTAAAAGACGAGTGATGGGTGA
CACAACACGCACATCACTCCACACACTAGTAGTAGACCATCATAAAAACG
AAGTAGAGAATTTTTCTTTTTTTTTAATCACCCTTACAGGAGGCGTAACC
CCCACAATATTTAGGCACACTTGCAGCTTCTTATTTTTTTGCTGCATGTG
TTTGCTTATTAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTGGG
GCCGCACTTGCAGTTACCTTCAGTCTCAGCAGCCTGAACGTCCATGACAA
CAACGGTGCTGACAAAGCTCTAAGTCAGTCTCGACGAAGTCAGCAGCATA
GCTGCTGGCCTTCTTCACACACTGGCTCCTGTCAGCGCAGTCGCAGTTGC
CGCAGGTGTCCGACATGTTGATTGAGCTTAGAACTTGGAATTTAAAACTG
GAAATAGAGGGCTCTTTATTGTACGAAACTTGCTTCCT
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