CN181893

Overview
NameCN181893
Unique NameCN181893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1740 contig Csv1_Contig1740:28..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181893 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.870e-62
Identity = 114/171 (66.67%), Postives = 139/171 (81.29%), Query Frame = 1 
Query:  205 DCRSSLVMSIGCTRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYERYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLG 717
            D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT Y+RYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLG
Sbjct:   74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLG 244
The following BLAST results are available for this feature:
BLAST of CN181893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH2.870e-6266.67Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181893 ID=CN181893; Name=CN181893; organism=Citrus sinensis; type=EST; length=719bp
GAGGATTTTTACATCACCACCGCAGCAAGAGAAATGGAGAAGATAGCAGT
AATGAGTGTCAGATCCATACGGCGAGCAGCGTGCGTCAGATCTTCAATAA
TAGCCGCCGCCAACAACCATCATCTCCGCCACTTGTCGTCTTCTCGATCG
CTCTTCAGTTTATCTTCACCTGCTGCTTCGATTCCTTCCAAATCCATCCC
TTTTGATTGCCGGTCTTCTCTTGTGATGAGCATAGGATGCACCCGTTCTT
TCAGTGAAGATGTTGCTCACATGCCTGTAATAAGAGACCCTGAAATTCAG
CGTGCTTTCAAGGACTTGATGGCTGCAGACTGGGGTGAGCTTCCTGCTTC
TGTCATCCATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGG
CTGGCCAGGAGGTCTTGAAAAATGTTTTCAGTGCTGCTGAAGCAGTTGAG
GAATTCATTGGGATTATTATGAACATTAAAATGGAATTTGATGATGAAAT
TGGGCTAAGTGGTGAGAATGTAAAACCCTTGTCAAATGAATTATCCTCTG
CAATTCGTACAGTTTATGAACGTTATGCTACCTACTTGGATGCATTTGGC
CCTGATGAATCCTATCTGCGGAAGAAGGTAGAAACAGAGTTGGGTTCAAA
AATGATTTTCCTAAAGATGAGATGTGCCGGCCTTGGTTCTGAGTGGGGAA
AGGTTACTGTTCTTGGAAC
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