CN181861

Overview
NameCN181861
Unique NameCN181861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:215..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.674e-62
Identity = 106/127 (83.46%), Postives = 118/127 (92.91%), Query Frame = -1
Query:  309 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 689
            RVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:   54 RVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.903e-58
Identity = 98/126 (77.78%), Postives = 113/126 (89.68%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   57 RVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.163e-57
Identity = 98/126 (77.78%), Postives = 113/126 (89.68%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   57 RVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.885e-56
Identity = 98/127 (77.17%), Postives = 112/127 (88.19%), Query Frame = -1
Query:  309 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 689
            RVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R   IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISFIA KPPGV
Sbjct:   56 RVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.380e-56
Identity = 96/125 (76.80%), Postives = 108/125 (86.40%), Query Frame = -1
Query:  315 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 689
            RVQCM+VWP  G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.333e-56
Identity = 95/126 (75.40%), Postives = 111/126 (88.10%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.088e-55
Identity = 95/126 (75.40%), Postives = 108/126 (85.71%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KPPG
Sbjct:   54 RVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 97/126 (76.98%), Postives = 108/126 (85.71%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 96/126 (76.19%), Postives = 108/126 (85.71%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPPG
Sbjct:   52 RVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.856e-55
Identity = 94/126 (74.60%), Postives = 111/126 (88.10%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
The following BLAST results are available for this feature:
BLAST of CN181861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_LACSA2.674e-6283.46Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY8.903e-5877.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.163e-5777.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE4.885e-5677.17Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA6.380e-5676.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU8.333e-5675.40Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_AMAHP1.088e-5575.40Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS8_NICPL1.421e-5576.98Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS1_SOYBN1.421e-5576.19Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOLTU1.856e-5574.60Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181861 ID=CN181861; Name=CN181861; organism=Citrus sinensis; type=EST; length=689bp
GCCCCTTTTGGAGAATCATAAAACTACTCTTTTATTCCAGTAATTCTCAC
TCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAAGG
ATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAAGCCAAAGTCGG
GGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAAA
TTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTAC
ACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATTG
GGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCAC
TTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTATT
CCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCAC
CCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATCC
TGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAATT
CCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTTGAGC
AAAGCTTCATCGGACAGTGGCGGGAGGTATGAGAGAGTCTCGAACTTCTT
CAAGCCAGGTGGTGGCCACACCTTCATGCATTGGACTCT
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