CN188758

Overview
NameCN188758
Unique NameCN188758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188758 vs. ExPASy Swiss-Prot
Match: FAAA_BOVIN (Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.258e-50
Identity = 98/203 (48.28%), Postives = 123/203 (60.59%), Query Frame = 1
Query:   49 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLNLLSLDASFVPLIVNSSCTDWGQLKETSKVA*VLFLCAICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGT 657
            LDFELEMA  VGPGN+LG+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PFA  +P+QDP+PLPYL       +DI+L V +K  G   +  + RSNFKY+                                                  YWT+ QQL HH++NGCNL+ GDLL +
Sbjct:  196 LDFELEMAFFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINLSVALKGEGMSQAATICRSNFKYM--------------------------------------------------YWTMLQQLTHHSVNGCNLQPGDLLAS 348          
BLAST of CN188758 vs. ExPASy Swiss-Prot
Match: FAAA_HUMAN (Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.802e-50
Identity = 98/203 (48.28%), Postives = 121/203 (59.61%), Query Frame = 1
Query:   49 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLNLLSLDASFVPLIVNSSCTDWGQLKETSKVA*VLFLCAICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGT 657
            LD ELEMA  VGPGN LG+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PFA  +PKQDP+PLPYL       +DI+L V +K  G   +  + +SNFKY+                                                  YWT+ QQL HH++NGCNLR GDLL +
Sbjct:  196 LDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTVSPWVVPMDALMPFAVPNPKQDPRPLPYLCHDEPYTFDINLSVNLKGEGMSQAATICKSNFKYM--------------------------------------------------YWTMLQQLTHHSVNGCNLRPGDLLAS 348          
BLAST of CN188758 vs. ExPASy Swiss-Prot
Match: FAAA_RAT (Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.065e-49
Identity = 96/205 (46.83%), Postives = 121/205 (59.02%), Query Frame = 1
Query:   43 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLNLLSLDASFVPLIVNSSCTDWGQLKETSKVA*VLFLCAICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGT 657
            ++LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI+L V +K  G   +  + RSNFK++                                                  YWT+ QQL HH++NGCNLR GDLL +
Sbjct:  194 KRLDMELEMAFFVGPGNRFGEPIPISKAQEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVALKGEGMSQAATICRSNFKHM--------------------------------------------------YWTILQQLTHHSVNGCNLRPGDLLAS 348          
BLAST of CN188758 vs. ExPASy Swiss-Prot
Match: FAAA_MOUSE (Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.372e-49
Identity = 96/203 (47.29%), Postives = 119/203 (58.62%), Query Frame = 1
Query:   49 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLNLLSLDASFVPLIVNSSCTDWGQLKETSKVA*VLFLCAICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGT 657
            LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI+L V +K  G   +  + RSNFK++                                                  YWT+ QQL HH++NGCNLR GDLL +
Sbjct:  196 LDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHM--------------------------------------------------YWTMLQQLTHHSVNGCNLRPGDLLAS 348          
BLAST of CN188758 vs. ExPASy Swiss-Prot
Match: FAAA_DICDI (Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.439e-46
Identity = 95/204 (46.57%), Postives = 119/204 (58.33%), Query Frame = 1
Query:   49 LDFELEMAAVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLNLLSLDASFVPLIVNSSCTDWGQLKETSKVA*VLFLCAICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGT 657
            LDFELEM A++G    +LG+PI +  A DHIFG++L+NDWSARDIQ WEYVPLGPFL K+FG+T+SPW+VT++AL+PFA   P QDPQP+ YL E+ +  +DI L V IK         V+ SN KY+                                                  YWTLTQQLAHHT+NGCN+ +GDLLGT
Sbjct:  201 LDFELEMGALIGGESTKLGEPISIESAKDHIFGLVLLNDWSARDIQKWEYVPLGPFLAKNFGSTISPWVVTMEALQPFATKPPTQDPQPMKYLQEQGNTTFDIELSVSIKSPKMSKPHKVSTSNLKYM--------------------------------------------------YWTLTQQLAHHTVNGCNMNAGDLLGT 354          
BLAST of CN188758 vs. ExPASy Swiss-Prot
Match: FAAA_EMENI (Fumarylacetoacetase OS=Emericella nidulans GN=fahA PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.351e-38
Identity = 93/208 (44.71%), Postives = 116/208 (55.77%), Query Frame = 1
Query:   43 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD--SPKQDPQPLPYLAEKISKN-YDISLEVQIKPAGKEDSCVVTRSNFKYLNLLSLDASFVPLIVNSSCTDWGQLKETSKVA*VLFLCAICISFFPNPNDRYWTLTQQLAHHTINGCNLRSGDLLGT 657
            +KLD ELE+A  V   N+LG P+ +++A DHIFGV+LMNDWSARDIQAWEYVPLGPF  K+FGTT++PW+V +DALEPF      P      LPYL EK +   YDI LEV++  AG E + V++ SN K  NLL                                                ++  Q LAHHTI GCNL +GDLLG+
Sbjct:  204 KKLDIELELAFFVSTPNDLGHPVHIDKAEDHIFGVVLMNDWSARDIQAWEYVPLGPFNAKNFGTTITPWVVLIDALEPFRTVGLEPGNRESLLPYLREKRADTAYDIPLEVEVTNAGGEPT-VISHSNAK--NLL------------------------------------------------YSFPQMLAHHTITGCNLNTGDLLGS 360          
The following BLAST results are available for this feature:
BLAST of CN188758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAAA_BOVIN1.258e-5048.28Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1[more]
FAAA_HUMAN2.802e-5048.28Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV... [more]
FAAA_RAT1.065e-4946.83Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE... [more]
FAAA_MOUSE2.372e-4947.29Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV... [more]
FAAA_DICDI1.439e-4646.57Fumarylacetoacetase OS=Dictyostelium discoideum GN... [more]
FAAA_EMENI9.351e-3844.71Fumarylacetoacetase OS=Emericella nidulans GN=fahA... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006L08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188758 ID=CN188758; Name=CN188758; organism=Citrus sinensis; type=EST; length=659bp
TTTGCTCCATCTGGAAACTCTCCACCACCTTTTGGGCCTTCACAGAAGCT
AGACTTTGAGCTAGAAATGGCAGCTGTTGTTGGTCCTGGAAATGAATTGG
GGAAGCCTATTGATGTTAATGAAGCAGCAGATCATATATTTGGAGTTATG
TTGATGAATGACTGGAGTGCTAGAGACATACAGGCATGGGAATATGTCCC
TCTTGGGCCTTTTCTTGGAAAGAGTTTTGGCACTACATTATCCCCTTGGA
TTGTGACACTTGATGCTCTTGAACCATTTGCCTGTGATTCTCCCAAACAG
GATCCCCAGCCATTGCCTTATCTTGCTGAAAAGATATCCAAAAACTATGA
TATTTCATTAGAGGTTCAAATCAAACCTGCTGGAAAAGAAGATTCATGTG
TGGTCACAAGGAGCAATTTTAAGTACTTAAATTTACTTTCCTTGGATGCA
TCTTTCGTTCCTCTGATAGTGAATTCATCATGTACTGATTGGGGTCAGCT
AAAGGAAACTTCTAAAGTTGCGTAGGTCCTTTTTTTGTGTGCAATATGCA
TTAGTTTTTTTCCTAACCCCAATGACAGGTATTGGACATTGACTCAGCAG
CTTGCACACCATACAATCAATGGTTGCAACCTAAGGTCTGGAGATCTGCT
TGGAACTGG
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