CN181856

Overview
NameCN181856
Unique NameCN181856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181856_ssr5 microsatellite CN181856_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.159e-34
Identity = 69/112 (61.61%), Postives = 80/112 (71.43%), Query Frame = 2
Query:  374 PNSESCRAETRSFLRGIDVNRLPSHAD-NEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            PNS+S + ETR+F+RGIDVNR PS A+  +E+              GKRSERE + D        SRGISDDEDGD SRKKLRLSKDQSAILEE+FK+H+TLNPKQK ALAK
Sbjct:   55 PNSDSSQKETRTFIRGIDVNRPPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREEDTDPQG-----SRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAK 161          

HSP 2 Score: 44.2838 bits (103), Expect = 3.159e-34
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  150 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSL-QKTPWNEAL---FPPSDPS 320
            M EKDDLGLSL L+FP+   +L+ N  PS + + S S F L +++ WNE+     P SD S
Sbjct:    2 MFEKDDLGLSLGLNFPKKQINLKSN--PSVSVTPSSSSFGLFRRSSWNESFTSSVPNSDSS 60          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.151e-31
Identity = 62/113 (54.87%), Postives = 71/113 (62.83%), Query Frame = 2
Query:  407 SFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXX-GKRSERE----------PNGDELEMERACSRGISDDED--GDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            S LR IDVN  PS  + EE+               GKRSERE           + DE+  +R  SRG SD+E+  G+TSRKKLRLSKDQSA LEE+FKEHNTLNPKQKLALAK
Sbjct:   50 SDLRKIDVNSFPSTVNCEEDTGVSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAK 162          

HSP 2 Score: 57.7658 bits (138), Expect = 5.151e-31
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 3
Query:  150 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWNEALFPPSD 314
            M  K+DLGLSLSL F QNH+ LQ+NL P+S+ S      +LQ+ PWN+   P SD
Sbjct:    2 MMGKEDLGLSLSLGFSQNHNPLQMNLNPNSSLSN-----NLQRLPWNQTFDPTSD 51          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.316e-28
Identity = 62/116 (53.45%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  398 ETRSFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXX-GKR--SEREPN-----GDELE--MERACSRGISDDED---GDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            + + FLR IDVN LP+  D EEE               GKR  +ERE       GD+L+  ++R+ SRG SD+E+   G+T RKKLRLSKDQSA+LE++FKEHNTLNPKQKLALAK
Sbjct:   52 QKQQFLRKIDVNSLPTTVDLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAK 167          

HSP 2 Score: 49.6766 bits (117), Expect = 1.316e-28
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 3
Query:  150 MAEKDDLGLSLSLSFPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWNEALFPPSD 314
            M  K+DLGLSLSL F QN H LQLNL P+S    SP   +LQ  PWN+ L   SD
Sbjct:    2 MMGKEDLGLSLSLGFAQN-HPLQLNLKPTS----SPMS-NLQMFPWNQTLVSSSD 50          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 5.705e-22
Identity = 63/130 (48.46%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  380 SESCRAETRSFLRGIDVNRLPS----HADNEEEXXXXXXXXXXXXXXGKRSEREPNG----------DELEMERA-CSRGI-SDDEDG-----DTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            S    ++ RSFLRGIDVNR PS      ++E                GK+SERE             ++ E+ERA CS G  SDDEDG     D+SRKKLRLSK+Q+ +LEE+FKEH+TLNPKQK+ALAK
Sbjct:   65 SSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSVMSGKKSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAK 194          

HSP 2 Score: 32.3426 bits (72), Expect = 5.705e-22
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:  150 MAEKDD-LGLSLSLS--FPQNHHSLQLNLMPSSACSTSPSGFSLQKTPWN 290
            M+E+DD LGLSLSLS  F Q   S +LN MP ++ ++S     +Q++ +N
Sbjct:    1 MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYN 50          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 60/118 (50.85%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  395 AETRSFLRGIDVNRLPSHAD----NEEEXXXXXXXXXXXXXXGKRSEREP--NGDELEMERA-CSRGI----SDDEDG---DTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            ++  SFLRG +VNR  S        EE               G + +      GDE E ERA CSRG     SDDEDG   D SRKKLRLSKDQ+ +LEE+FKEH+TLNPKQKLALAK
Sbjct:   78 SDAGSFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLSGNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAK 195          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 52/112 (46.43%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  410 FLRGIDVNRLP------------SHADNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDED-GDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            FLRGIDVNR P            S ++ +EE              GKR              A +   SDDED G  SRKKLRLSKDQ+A+LE++FKEHNTLNPKQK ALA+
Sbjct:   85 FLRGIDVNRAPAAETTTTTARGPSCSEEDEEPGASSPNSTLSSLSGKRGAPSA-------ATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALAR 189          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 52/112 (46.43%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  410 FLRGIDVNRLP------------SHADNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDED-GDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            FLRGIDVNR P            S ++ +EE              GKR              A +   SDDED G  SRKKLRLSKDQ+A+LE++FKEHNTLNPKQK ALA+
Sbjct:   85 FLRGIDVNRAPAAETTTTTARGPSCSEEDEEPGASSPNSTLSSLSGKRGAPSA-------ATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALAR 189          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 2
Query:  554 ERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            +R+CSR  SD++DG ++RKKLRLSK+QSA LEESFKEH+TLNPKQKLALAK
Sbjct:  160 DRSCSRA-SDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAK 209          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 2
Query:  554 ERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            +R+CSR  SD++DG ++RKKLRLSK+QSA LEESFKEH+TLNPKQKLALAK
Sbjct:   73 DRSCSRA-SDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAK 122          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 57/131 (43.51%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  380 SESCRAETRSFLRGIDVNRLPSHA-------DNEEEXXXXXXXXXXXXXXGKRSEREPNGDELE---------------MERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            SE+ R+E  +  RG DVNR PS A       D+EE               G     + +G  L                 ER+ SR  SDD++G ++RKKLRLSK+QSA LEESFKEH+TLNPKQK+ALAK
Sbjct:   79 SETGRSEAAA--RGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGQGLRGHAEAAAQGGGGGGGGERSSSRA-SDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAK 206          
The following BLAST results are available for this feature:
BLAST of CN181856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
HAT4_ARATH3.159e-3461.61Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT2_ARATH5.151e-3154.87Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HAT1_ARATH1.316e-2853.45Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]
HAT3_ARATH5.705e-2248.46Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
ATHB4_ARATH1.368e-1650.85Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX1_ORYSJ1.280e-1446.43Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI1.280e-1446.43Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX11_ORYSJ2.184e-1476.47Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI2.184e-1476.47Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX27_ORYSJ4.865e-1443.51Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181856 ID=CN181856; Name=CN181856; organism=Citrus sinensis; type=EST; length=706bp
GAGGCTCTCTCTCTCCGGAGGCACAGAATTTCTCTTGTTACTCGAATAAA
GAGCCGTTTGAGCAAGAACAAGAAAACACTTCAAATACTATACAAATACG
TCAAATAATTTAAAGCTAGAGCTGTTTGAGCAAGAACAAGAAAACAGCCA
TGGCTGAGAAAGATGATCTGGGTTTGAGTCTTAGCTTGAGCTTTCCTCAA
AATCACCATTCTTTACAGCTAAATCTCATGCCTTCTTCTGCTTGTTCCAC
TTCTCCTTCTGGTTTCAGTCTCCAAAAAACCCCTTGGAACGAGGCCTTAT
TCCCACCTTCAGATCCAAGTTTCAGAAAATAATTTCACGACACTATATCT
AATTCTTGATCGGACATGCAGATCCAAACTCTGAGTCTTGTCGCGCCGAG
ACCCGATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCGTCACATGC
AGATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGATTTCGA
GCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAGCTCGAA
ATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGATGAAGATGGTGACAC
TTCAAGAAAGAAGCTGAGACTTTCTAAAGATCAGTCAGCCATTCTTGAAG
AGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTG
GCAAAG
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