FC921834

Overview
NameFC921834
Unique NameFC921834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:513..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.125e-22
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   54 RE*KKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            RE K   T GPVLIH VTEKG+GYP AE AAD+ HGV KFDP TGKQFK+ + TL+YT
Sbjct:  341 REVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYT 398          

HSP 2 Score: 39.6614 bits (91), Expect = 3.125e-22
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVK 64
            YIGPVDGHN++DL+TI + VK
Sbjct:  324 YIGPVDGHNIDDLITILREVK 344          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.615e-20
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   54 RE*KKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            +E K   T GPVLIH VTEKG+GYP AE A D+ HGVVKFDP TG+QFKT + T +YT
Sbjct:  345 KEVKSTRTTGPVLIHVVTEKGRGYPYAERADDKYHGVVKFDPATGRQFKTTNKTQSYT 402          

HSP 2 Score: 38.1206 bits (87), Expect = 1.615e-20
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVK 64
            YIGPVDGHN++DLV I + VK
Sbjct:  328 YIGPVDGHNIDDLVAILKEVK 348          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.817e-20
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3
Query:   54 RE*KKMPTPGPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            +E +   T GPVLIH VTEKG+GYP AE AAD+ HGV KFDP TGKQFK  + T +YT
Sbjct:  344 KEVRSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKGSAKTQSYT 401          

HSP 2 Score: 36.965 bits (84), Expect = 7.817e-20
Identity = 13/21 (61.90%), Postives = 19/21 (90.48%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVK 64
            YIGPVDGHN++DL++I + V+
Sbjct:  327 YIGPVDGHNIDDLISILKEVR 347          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.272e-17
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GP+L+H VT+KGKGYPPAEA+AD+ HGVVKFD  TG Q K KS   +YT
Sbjct:  274 GPILVHVVTQKGKGYPPAEASADKYHGVVKFDVVTGAQVKAKSNAPSYT 322          

HSP 2 Score: 32.7278 bits (73), Expect = 4.272e-17
Identity = 10/22 (45.45%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVKE 67
            Y+GP+DGHN+E L+ + + V++
Sbjct:  249 YVGPIDGHNLEHLLPVLKNVRD 270          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.878e-16
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD  TG Q K+ +   +YT
Sbjct:  288 GPVLIHVVTQKGKGYPPAEAAADKYHGVAKFDVITGAQAKSPAGAPSYT 336          

HSP 2 Score: 32.3426 bits (72), Expect = 5.878e-16
Identity = 11/23 (47.83%), Postives = 19/23 (82.61%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVKEN 70
            +IGP+DGH++E LV + + V++N
Sbjct:  263 HIGPIDGHDLEALVPVLRNVRDN 285          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.642e-16
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GP+L+H VT+KGKGY PAEA+AD+ HGVVKFD  TG Q K KS   +YT
Sbjct:  274 GPILVHVVTQKGKGYAPAEASADKYHGVVKFDVVTGAQVKAKSNAPSYT 322          

HSP 2 Score: 31.5722 bits (70), Expect = 7.642e-16
Identity = 9/22 (40.91%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVKE 67
            Y+GP+DGHN++ L+ + + V++
Sbjct:  249 YVGPIDGHNLDHLLPVLKNVRD 270          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.642e-16
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVL+H VT KGKGY PAEA++D+ HGV  FD  TGKQ KT+S  L YT
Sbjct:  275 GPVLVHVVTHKGKGYAPAEASSDKYHGVNSFDVVTGKQIKTQSNALAYT 323          

HSP 2 Score: 32.3426 bits (72), Expect = 7.642e-16
Identity = 10/22 (45.45%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVKE 67
            Y+GP+DGHN++ L+ + + V+E
Sbjct:  250 YVGPIDGHNLKHLLPVLKNVRE 271          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.933e-16
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVL+H VT KGKGYPPAEA++D+ HGV +FD  TGKQ K  S  L YT
Sbjct:  275 GPVLVHVVTHKGKGYPPAEASSDKYHGVNRFDVTTGKQVKASSNILPYT 323          

HSP 2 Score: 31.187 bits (69), Expect = 9.933e-16
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVKE 67
            Y+GP+DGHN+  L+ + + V+E
Sbjct:  250 YVGPIDGHNLGHLLPVLKNVRE 271          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.291e-15
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTY 224
            GP LIH VT+KGKGY PAEAAAD+ H VVKFD  TG Q KTKS   +Y
Sbjct:  276 GPFLIHVVTQKGKGYAPAEAAADKYHAVVKFDIATGTQAKTKSNAPSY 323          

HSP 2 Score: 33.4982 bits (75), Expect = 1.291e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVKE 67
            Y+GP+DGHN++ L+ I Q V++
Sbjct:  251 YVGPIDGHNLDHLLPILQNVRD 272          
BLAST of FC921834 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.677e-15
Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 3
Query:   81 GPVLIHAVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLTYT 227
            GPVLIH VT+KGKGYPPAEAAAD+ HGV KFD  TG Q K K     YT
Sbjct:  280 GPVLIHVVTQKGKGYPPAEAAADKYHGVNKFDVITGAQAKAKPNAPAYT 328          

HSP 2 Score: 31.187 bits (69), Expect = 1.677e-15
Identity = 10/24 (41.67%), Postives = 19/24 (79.17%), Query Frame = 2
Query:    2 YIGPVDGHNVEDLVTIFQRVKENA 73
            +IGP+DGH+ + L+ + + V++NA
Sbjct:  255 HIGPIDGHSFDHLLPVLRNVRDNA 278          
The following BLAST results are available for this feature:
BLAST of FC921834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DXS_ORYSJ3.125e-2268.97Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH1.615e-2065.52Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN7.817e-2063.79Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_AZOC54.272e-1767.351-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_MESSB5.878e-1667.351-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_XANP27.642e-1665.311-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_BARQU7.642e-1665.311-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BART19.933e-1665.311-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_RHOP51.291e-1568.751-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHIME1.677e-1569.391-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionC06052H11T7 RindPdigS Citrus sinensis cDNA clone C06052H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921834 ID=FC921834; Name=FC921834; organism=Citrus sinensis; type=EST; length=229bp
CTACATTGGTCCAGTGGATGGACACAATGTCGAAGATTTAGTTACTATCT
TTCAGAGAGTGAAAGAAAATGCCTACGCCAGGGCCAGTTCTGATCCATGC
TGTAACAGAGAAGGGAAAGGGCTATCCCCCAGCGGAGGCAGCAGCTGATA
GAATGCATGGAGTTGTCAAGTTCGATCCAAAAACTGGCAAGCAATTTAAG
ACCAAATCCCCTACGCTCACGTATACACA
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