CN188754

Overview
NameCN188754
Unique NameCN188754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188754_ssr16 microsatellite CN188754_ssr16:16..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188754 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 77/131 (58.78%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  330 RVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 722
            RV VDEVDFFS+ ++RVS  +  +DD     N V IK E S  +   R+  DVN GL+LLTA NTGSD+STVDDG+S D  D KR KIE  QLQ EL++M  ENQRLRDMLSQ T N+NALQM ++A+M+Q
Sbjct:   27 RVVVDEVDFFSEKRDRVSRENINDDDDEG--NKVLIKMEGSRVEENDRSR-DVNIGLNLLTA-NTGSDESTVDDGLSMDMED-KRAKIENAQLQEELKKMKIENQRLRDMLSQATTNFNALQMQLVAVMRQ 152          
BLAST of CN188754 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/132 (49.24%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  330 RVAVDEVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSH-DQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 722
            R  V+EVDFF   + R  +S   ++     T+ VH+K+ENS  D    R+   +N GL+LLTA NTGSD+S VDDG+S D  +EKRTK E  QL+ EL++ + +NQRL+ MLSQ TNN+N+LQM ++A+M+Q
Sbjct:   25 RAVVNEVDFFRSAEKRDRVSREEQNIIADETHRVHVKRENSRVDDHDDRSTDHINIGLNLLTA-NTGSDESMVDDGLSVD-MEEKRTKCENAQLREELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQ 154          
BLAST of CN188754 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 83/215 (38.60%), Postives = 112/215 (52.09%), Query Frame = 3
Query:  117 MDKGW-GLTLDSDHPIVSNLNFFTSNKPKP-----SLARFRTNRDMXXXXXXXXXXVRMFQLXXXXXXXXXXXXXXXRVAVD-------EVDFFSDDKNRVSISDHREDDRNKTTNSVHIKKENSHDQLRHRTGLDVNTGLHLLTAANTGSDQSTVDDGVSSDHADEKRTKIELTQLQVELQQMNTENQRLRDMLSQVTNNYNALQMHIIALMQQ 722
            MD+GW GLTLDS    + N N  +    +      +++R     D            R F +                VA D       EVDFFSD K+RV     REDD         +KKE   D+       DVNTGL+L T  NT SD+S +DDG SS+  D KR K EL +LQ EL++M  +NQ+LR++L+QV+N+Y +LQMH+++LMQQ
Sbjct:    1 MDRGWSGLTLDSSSLDLLNPNRISHKNHRRFSNPLAMSRIDEEDDQKTRISTNGSEFR-FPVSLSGIRDREDEDFSSGVAGDNDREVPGEVDFFSDKKSRVC----REDDEG-----FRVKKEEQDDRT------DVNTGLNLRTTGNTKSDESMIDDGESSEMED-KRAKNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQ 198          
The following BLAST results are available for this feature:
BLAST of CN188754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRK31_ARATH2.472e-2958.78Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK42_ARATH3.693e-2549.24Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRKY6_ARATH4.083e-2438.60WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006L04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188754 ID=CN188754; Name=CN188754; organism=Citrus sinensis; type=EST; length=724bp
GCGGTATTAACCCAACTCTCTCTCTCTCTCTCGATTCGTTCCACTTTCTC
TTCTAAATCTTCCCTTCTTTTGCTTTTGCTTTTGCTTAATTAACTTTCTT
CAATTTAATTATATTTATGGACAAAGGATGGGGTCTCACACTTGATTCTG
ATCATCCTATTGTTAGTAATCTGAATTTCTTCACAAGCAACAAGCCAAAG
CCATCATTAGCAAGGTTTAGAACAAACCGTGACATGGCTGCTTCTGGTGC
TGCTGACTCAGCTTCTGTCAGAATGTTTCAGCTTCCGGCCTCCGACAATA
GTAATGCTCCCTCCTCGTCTGATGATAATCGGGTGGCTGTTGATGAAGTT
GACTTCTTTTCCGATGACAAGAACAGGGTTTCTATCTCTGATCATCGTGA
AGATGATCGTAACAAGACAACAAATTCTGTTCACATCAAGAAAGAGAATT
CTCACGACCAACTTCGTCACAGAACTGGCTTGGATGTTAATACTGGCTTG
CATCTACTTACTGCCGCTAACACTGGAAGCGATCAATCAACGGTTGATGA
TGGGGTTTCATCTGATCATGCGGACGAAAAACGAACAAAAATTGAGTTGA
CTCAATTGCAAGTGGAGCTGCAACAAATGAATACAGAAAATCAAAGGTTA
AGAGACATGCTTAGCCAAGTAACTAACAATTACAATGCACTACAGATGCA
TATTATTGCATTAATGCAACAGCA
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