CN188753

Overview
NameCN188753
Unique NameCN188753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188753 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 68/137 (49.64%), Postives = 79/137 (57.66%), Query Frame = -1
Query:  331 DGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXFPGQPQNLASVTNTQLPQVFGQALYN---QSKFSGXXXXXXXXXXXXXXSHQTXXXXXXXXXXLADTVSAATAAITADPNF 729
            DG+MNP NLLARAILPCSSSMATISASAPFPT+TLDLT+SPN              F  +P    +V    LPQV GQA+YN   QSKFSG                            +A++VSAA+AAI +DPNF
Sbjct:  383 DGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAV----LPQVVGQAMYNNQQQSKFSGLQL-------------PAQPLQIAATSSVAESVSAASAAIASDPNF 502          
BLAST of CN188753 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 65/143 (45.45%), Postives = 75/143 (52.45%), Query Frame = -1
Query:  331 DGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNP---------XXXXXXXXXXXXXFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGXXXXXXXXXXXXXXSHQTXXXXXXXXXXLADTVSAATAAITADPNF 729
            DG+MNP NLLARA+LPCS+SMATISASAPFPTVTLDLTHSP P                         Q Q + ++    LP V GQALYNQSKFSG                            +ADT++    A+TADPNF
Sbjct:  398 DGMMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSKFSGLQFSGGSPSTAAFSQSHA----------VADTIT----ALTADPNF 526          
BLAST of CN188753 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 63/136 (46.32%), Postives = 72/136 (52.94%), Query Frame = -1
Query:  331 DGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXFPGQPQNLASVTNTQLPQVFGQALY--NQSKFSGXXXXXXXXXXXXXXSHQTXXXXXXXXXXLADTVSAATAAITADPNF 729
            DG+MNP NLLAR ILPCSSSMATISASAPFPT+TLDLT SPN                 Q   L  +  + LP + GQALY   QSKFSG                              ++VSAATAAI ++PNF
Sbjct:  379 DGLMNPTNLLARTILPCSSSMATISASAPFPTITLDLTESPNGNNPTNNPLMQF----SQRSGLVELNQSVLPHMMGQALYYNQQSKFSG-------------------LHMPSQPLNAGESVSAATAAIASNPNF 491          
The following BLAST results are available for this feature:
BLAST of CN188753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRK31_ARATH2.826e-2049.64Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRKY6_ARATH4.820e-2045.45WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK42_ARATH6.961e-1946.32Probable WRKY transcription factor 42 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006L04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188753 ID=CN188753; Name=CN188753; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTAAGATTGAAACAAAGTTATTCCCATTAAAAAAT
AAGAATGAATGGAACATTTTTTTTTGTGTTCTAATTACCCTCCCCCACAA
CAAAGGATAAAGAAAAGAAAATATGAACATGTTTGCATCCCCTAAAAATA
AAAGAACTAATAACATGAAAACATTGATTAAAAGTGAAAAAGAAAGAGCT
GGCCCATCTCTAATTTGATGAGAAGCTGTAAAGTTTATTGGTGTTGCCTG
TTGTTATTATTGGAGTTGTTGCTAAAAGGATTTTGTGCACCGCCAATAAT
GGAAGTGATGGCGGCGGCAAGAGCTGCAGTGAAGTTTGGATCAGCTGTGA
TGGCGGCCGTGGCGGCACTTACAGTGTCAGCCAACTGCTGCGGTTGTTGC
AATGGTGGAGGTAGAGTTTGATGGCTACCCGATTGAGAATTAGACCCAAT
ATTTTGAGATAATTGTAGACCTGAGAATTTTGATTGATTGTAAAGGGCCT
GACCAAAAACTTGAGGCAATTGAGTGTTTGTGACAGAGGCAAGATTTTGT
GGCTGGCCTGGAAATTGGACTTGGAATTGAGCTGCTTGCCTTTGGAGTTG
TAAAGGGTTTGGTGAATGAGTAAGGTCTAATGTAACTGTAGGAAATGGGG
CAGAAGCTGAAATCGTAGCCATGCTTGATGAGCAAGGAAGAATAGCTCTG
GCTAGCAAATTGGGGTTCATTATCCCATCTGC
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