CN181847

Overview
NameCN181847
Unique NameCN181847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:166..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.312e-92
Identity = 120/134 (89.55%), Postives = 128/134 (95.52%), Query Frame = -3 
Query:  149 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220

HSP 2 Score: 102.449 bits (254), Expect = 4.312e-92
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KYAGKDAFH
Sbjct:   39 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 5.647e-89
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = -3 
Query:  152 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219

HSP 2 Score: 97.8265 bits (242), Expect = 5.647e-89
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 2.133e-88
Identity = 119/132 (90.15%), Postives = 126/132 (95.45%), Query Frame = -3 
Query:  155 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218

HSP 2 Score: 100.908 bits (250), Expect = 2.133e-88
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFH
Sbjct:   39 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 1.054e-84
Identity = 114/132 (86.36%), Postives = 120/132 (90.91%), Query Frame = -3 
Query:  155 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 550
            LR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:   87 LRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218

HSP 2 Score: 96.6709 bits (239), Expect = 1.054e-84
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.339e-84
Identity = 112/132 (84.85%), Postives = 120/132 (90.91%), Query Frame = -3 
Query:  155 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 550
            LR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:   87 LRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218

HSP 2 Score: 97.8265 bits (242), Expect = 2.339e-84
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 8.828e-84
Identity = 112/131 (85.50%), Postives = 126/131 (96.18%), Query Frame = -3 
Query:  158 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 550
            LRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:   87 LRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217

HSP 2 Score: 92.8189 bits (229), Expect = 8.828e-84
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK+ VDEFPFCVHLVSWEKENVSSEALEA RIACNKYM K+AGKD FH
Sbjct:   39 KKRLVDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.795e-82
Identity = 114/132 (86.36%), Postives = 121/132 (91.67%), Query Frame = -3 
Query:  155 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218

HSP 2 Score: 93.9745 bits (232), Expect = 2.795e-82
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K+KGVDEFP+CVHLVSWE+ENVSSEALEAARI CNKYM K AGKDAFH
Sbjct:   39 KRKGVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.055e-81
Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = -3 
Query:  149 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 550
            LR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:   87 LRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220

HSP 2 Score: 97.8265 bits (242), Expect = 1.055e-81
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.342e-81
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = -3 
Query:  155 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218

HSP 2 Score: 92.0485 bits (227), Expect = 2.342e-81
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFH 86
[Close]
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.342e-81
Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = -3 
Query:  155 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218

HSP 2 Score: 92.0485 bits (227), Expect = 2.342e-81
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = -2 
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFH 86
The following BLAST results are available for this feature:
BLAST of CN181847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL10_VITRI4.312e-9289.5560S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME5.647e-8991.7360S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_EUPES2.133e-8890.1560S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ARATH1.054e-8486.3660S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH2.339e-8484.8560S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_PINTA8.828e-8485.5060S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_MAIZE2.795e-8286.3660S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL103_ARATH1.055e-8182.0960S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL102_ORYSJ2.342e-8185.6160S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI2.342e-8185.6160S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181847 ID=CN181847; Name=CN181847; organism=Citrus sinensis; type=EST; length=696bp
AAACAACTGCAAGGATCACATAGTTAAACCAAAGAAACATGTCACTTCAA
CTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAA
ACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACAGTAAATATCTTAGG
TTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTTGAGCCAAAGGACCA
TGACATCCGAGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTC
CGACTTCCACCGCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATT
TCCTGCTGACAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGG
CGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCCTTGCAACGGACAGA
AAGCAAGACCTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTC
CAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAGCCCCAGCACACGAA
AGCATCTTGTTAATACGCAGAACATGGAAGGGGTGCACCCTCACTCGCAA
AATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTACTTGTTGCAAGCG
ATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCTCCTTCTCCCAACT
GACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCTTTCTTCTTC
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