CN181840

Overview
NameCN181840
Unique NameCN181840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:462..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 2.670e-84
Identity = 148/182 (81.32%), Postives = 164/182 (90.11%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NLK TVK TVS VAKK LT+GA+GELHPSRFCEKDLLK  DREHVFAYIDDPCSATYPLMQK+RQVLVEHALNNGE+EK  ++SIFQKI AFEEELK VLPKEVE+AR  VE+G+P+IPNRIKECRSYPLY+FVRE LG+  LTGEKV SPGE+FDKVFTAMC+GKIIDP+L+CL  WNGAP
Sbjct:  231 NLKSTVKKTVSHVAKKTLTIGANGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKVRQVLVEHALNNGESEKNGSTSIFQKIGAFEEELKAVLPKEVESARDGVESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGAP 412
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.913e-82
Identity = 144/182 (79.12%), Postives = 165/182 (90.66%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NLK+TVKNTVSQVAK+VLT+G +GELHPSR CEKDLLK  D+EHVFAYIDDPCSATYPLMQKLRQVLVEHAL NGE E  + +SIFQKI +FEEELKT+LPKEVE+AR  VENG+P +PNRIKECRSYPLY+FVRE LG++ LTGEKV SPGE+FDKVFTA+C GK++DP+LECL+EWNGAP
Sbjct:  497 NLKNTVKNTVSQVAKRVLTMGFNGELHPSRLCEKDLLKLVDKEHVFAYIDDPCSATYPLMQKLRQVLVEHALVNGERETNSTTSIFQKIRSFEEELKTLLPKEVESARLEVENGNPVVPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGAP 678
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.240e-81
Identity = 144/182 (79.12%), Postives = 163/182 (89.56%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NLK TVKNTVSQVAKKVLT+G +GELHPSRFCE DLL+  DRE++FAYIDDPCSATYPLMQKLRQVLVEHAL NGE EK  ++SIFQKIAAFE+ELK +LPKEVE+AR  VE+G+P IPNRIKECRSYPLY+F+RE LG+ +LTGEKVTSPGEEFDKVFTAM +G+IIDP+L CL  WNGAP
Sbjct:  523 NLKSTVKNTVSQVAKKVLTMGVNGELHPSRFCELDLLRVVDREYIFAYIDDPCSATYPLMQKLRQVLVEHALKNGETEKNLSTSIFQKIAAFEDELKALLPKEVESARAVVESGNPAIPNRIKECRSYPLYKFIREELGTVYLTGEKVTSPGEEFDKVFTAMSKGEIIDPLLACLESWNGAP 704
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.620e-81
Identity = 139/182 (76.37%), Postives = 166/182 (91.21%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NL++TVK+TVSQVAK+VLT+G +GELHPSRFCEKDLL+  DRE++FAYIDDPCSATYPLMQKLRQVLVEHAL NGE+EK  ++SIFQKI AFEEE+KT+LPKEVE+ R  +ENG+  IPNRIKECRSYPLY+FVRE LG+  LTGEKV SPGEEFDKVFTA+C+G++IDP+++CL+EWNGAP
Sbjct:  529 NLRNTVKSTVSQVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQVLVEHALKNGESEKNLSTSIFQKIRAFEEEIKTLLPKEVESTRAAIENGNSAIPNRIKECRSYPLYKFVREELGTELLTGEKVRSPGEEFDKVFTALCKGEMIDPLMDCLKEWNGAP 710
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.763e-81
Identity = 145/182 (79.67%), Postives = 157/182 (86.26%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NLK+TVKNTVSQVAK+ LT G +GELHPSRFCEKDLLK  DRE+ FAYIDDPCSATYPLMQKLRQVLVEHAL N ENEK  N+SIFQKI  FEEELKT+LPKEVE AR   ENG   IPN+IKECRSYPLY+FVRE LG+  LTGEKV SPGEE DK+FTAMCQGKIIDP+LEC+ EWNGAP
Sbjct:  530 NLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKIVDREYCFAYIDDPCSATYPLMQKLRQVLVEHALANAENEKNVNTSIFQKITTFEEELKTLLPKEVEGARIAYENGQSAIPNKIKECRSYPLYKFVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGAP 711
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 2.763e-81
Identity = 143/182 (78.57%), Postives = 159/182 (87.36%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NL+ TVKNTVSQVAKKVLT G +GELHPSRFCEKDLLK  DRE VF Y+DDPCSATYPLMQ+LRQV+V+HAL+NGE EK A +SIFQKI AFEEELK VLPKEVE AR    NG+  IPNRIKECRSYPLYRFVRE LG+  LTGEKV SPGEEFDKVFTAMC+GK+IDP+++CL+EWNGAP
Sbjct:  532 NLRQTVKNTVSQVAKKVLTTGINGELHPSRFCEKDLLKVVDREQVFTYVDDPCSATYPLMQRLRQVIVDHALSNGETEKNAVTSIFQKIGAFEEELKAVLPKEVEAARAAYGNGTAPIPNRIKECRSYPLYRFVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGAP 713
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.608e-81
Identity = 144/182 (79.12%), Postives = 162/182 (89.01%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NLK TVKNTVSQVAK+VLT+G +GELHPSRFCEKDL+K  D EH+FAYIDDPCS TYPLMQKLRQVLVEHAL NGE EK +++SIFQKI AFEEELKT LPKEVE+AR  +E G+  IPNRIKECRSYPLY+FVRE L ++ LTGEKV SPGEEFDKVF+A+CQGK+IDP+LECLREWNGAP
Sbjct:  435 NLKSTVKNTVSQVAKRVLTIGVNGELHPSRFCEKDLIKVVDGEHLFAYIDDPCSCTYPLMQKLRQVLVEHALINGEKEKDSSTSIFQKIGAFEEELKTHLPKEVESARIELERGNSAIPNRIKECRSYPLYKFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGAP 616
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 4.713e-81
Identity = 144/182 (79.12%), Postives = 161/182 (88.46%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NLK++VKNTVSQVAKK LT+G +GELHPSRFCEKDLLK  DREHVFAYIDDPCSATYPL QKLRQVLV+HAL NGE+EK  N+SIFQKIA FEEELKT+LPKEVE+AR   E+G+PTIPN+I  CRSYPLY+FVRE LG+  LTGE V SPGEE DK+F+AMCQGKIIDP+LECL EWNGAP
Sbjct:  540 NLKNSVKNTVSQVAKKTLTMGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLSQKLRQVLVDHALVNGESEKNFNTSIFQKIATFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGAP 721
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 6.155e-81
Identity = 141/182 (77.47%), Postives = 165/182 (90.66%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NLK+TVKNTVSQVAK+VLT+G +GELHPSRFCEKDL+K  DRE+VFAYIDDPCSA+ PLMQKLRQVLV+HAL+NG+ EK + +SIFQKI AFE+ELKT+LPKEVE AR  +E+G+  IPNRIKECRSYPLY+ VRE +G++ LTGEKV SPGEEFDKVFTAMC+GK+IDPMLECL+EWNGAP
Sbjct:  535 NLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASSPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIPNRIKECRSYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAP 716
[Close]
BLAST of CN181840 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 300.056 bits (767), Expect = 6.155e-81
Identity = 144/182 (79.12%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:    7 NLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 552
            NL+ TVKNTVSQVAKKVLT G +GELHPSRFCEKDLLK  DRE V+ Y DDPCSATYPL+QKLRQV+V+HAL NGE+EK A +SIF KI AFEEELK VLPKEVE AR   +NG+  IPNRIKECRSYPLYRFVRE LG+  LTGEKVTSPGEEFDKVFTA+C+GKIIDPM+ECL EWNGAP
Sbjct:  540 NLRQTVKNTVSQVAKKVLTTGVNGELHPSRFCEKDLLKVVDREQVYTYADDPCSATYPLIQKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEVEAARAAYDNGTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGAP 721
The following BLAST results are available for this feature:
BLAST of CN181840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PALY_VITVI2.670e-8481.32Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PAL1_POPKI1.913e-8279.12Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PAL1_DAUCA1.240e-8179.12Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PALY_CAMSI1.620e-8176.37Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PALY_STYHU2.763e-8179.67Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL2_ARATH2.763e-8178.57Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PALY_PERAE3.608e-8179.12Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PALY_MEDSA4.713e-8179.12Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PALY_CITLI6.155e-8177.47Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL1_ARATH6.155e-8179.12Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181840 ID=CN181840; Name=CN181840; organism=Citrus sinensis; type=EST; length=621bp
GGAGGAAATTTGAAGCATACAGTCAAGAATACTGTCAGCCAAGTAGCTAA
GAAAGTCTTAACCGTCGGTGCTAGTGGAGAGCTTCATCCATCAAGATTCT
GTGAGAAGGATCTGCTCAAAGCGGCTGATCGCGAACACGTCTTTGCATAC
ATTGATGACCCCTGCAGTGCTACCTATCCATTGATGCAAAAGCTAAGGCA
AGTACTTGTTGAGCACGCACTGAACAATGGAGAGAACGAGAAGACTGCCA
ACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGAGGAATTGAAAACC
GTTTTGCCGAAAGAAGTTGAGAATGCCAGGCAGACTGTTGAGAATGGAAG
TCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCTTACCCGTTGTACA
GGTTCGTGAGGGAGGGGCTCGGGTCTAATTTTCTAACAGGGGAAAAAGTT
ACATCGCCCGGCGAGGAATTTGACAAAGTTTTTACAGCAATGTGCCAGGG
CAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAATGGCGCCC
CCTCTTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACATGGTCTTC
AATCCCTTGTGTTCTTGTGTT
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