CN188749

Overview
NameCN188749
Unique NameCN188749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig27 contig Csv1_Contig27:14..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.429e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 289.271 bits (739), Expect = 1.429e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.429e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.429e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM1_PETHY (Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.429e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM1_DAUCA (Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.429e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.183e-77
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQI+EFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM_CAPAN (Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3)

HSP 1 Score: 288.115 bits (736), Expect = 3.183e-77
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINY+EFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM2_SOYBN (Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.183e-77
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQI+EFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149
[Close]
BLAST of CN188749 vs. ExPASy Swiss-Prot
Match: CALM2_ARATH (Calmodulin-2/3/5 OS=Arabidopsis thaliana GN=CAM2 PE=1 SV=3)

HSP 1 Score: 288.115 bits (736), Expect = 3.183e-77
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 1 
Query:   43 SDQLTDDQISEFKEAFSLFDKDGHRCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 486
            +DQLTDDQISEFKEAFSLFDKDG  CITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMI+EADVDGDGQINYEEFVKVMMAK
Sbjct:    2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIKEADVDGDGQINYEEFVKVMMAK 149
The following BLAST results are available for this feature:
BLAST of CN188749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
CALM_LILLO1.429e-7797.97Calmodulin OS=Lilium longiflorum PE=2 SV=2[more]
CALM_EUPCH1.429e-7797.97Calmodulin OS=Euphorbia characias PE=2 SV=4[more]
CALM_BRYDI1.429e-7797.97Calmodulin OS=Bryonia dioica PE=2 SV=2[more]
CALM7_ARATH1.429e-7797.97Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ... [more]
CALM1_PETHY1.429e-7797.97Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2[more]
CALM1_DAUCA1.429e-7797.97Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 ... [more]
CALM_HORVU3.183e-7797.30Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2[more]
CALM_CAPAN3.183e-7797.30Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3[more]
CALM2_SOYBN3.183e-7797.30Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2[more]
CALM2_ARATH3.183e-7797.30Calmodulin-2/3/5 OS=Arabidopsis thaliana GN=CAM2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006K23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188749 ID=CN188749; Name=CN188749; organism=Citrus sinensis; type=EST; length=720bp
CGTTAAAGGTCTGTTTCTGTCTAAGTTTTCTCAACGATCACGTCTGATCA
ACTCACCGATGATCAGATCTCTGAATTTAAGGAAGCCTTCAGCCTCTTTG
ACAAGGATGGACACCGGTGTATTACTACTAAGGAGCTTGGAACTGTTATG
AGGTCACTCGGGCAGAACCCTACCGAAGCAGAACTCCAGGATATGATTAA
TGAAGTCGATGCTGACGGGAATGGTACCATTGACTTCCCGGAGTTCCTTA
ACTTGATGGCGCGCAAGATGAAGGACACTGATTCAGAGGAGGAGTTAAAG
GAGGCTTTTCGGGTTTTTGATAAGGATCAGAATGGGTTCATTTCTGCTGC
TGAACTCCGCCATGTGATGACAAATCTTGGTGAGAAGTTGACTGATGAGG
AAGTTGATGAGATGATTCGTGAAGCTGATGTGGATGGTGATGGCCAGATC
AATTATGAAGAGTTTGTTAAAGTCATGATGGCCAAGTGAGAACCTCTCAA
CTATCACTTAAAAAAAAAAAAATAAATAAATATCAAAATCTAAAGACTAA
AAAATCAAAGTGAAGAGTGCAGTTGTGACATCCTACATCGATCTCAAGAG
GTCTTGGCTTGTTTAAATATCCTGTGAGCTCCTTGACTTGTGGTTGTGTT
TAGGGTTGCAAGTCCATCAAAATCGTGATGACTTGTGTTCCTAATATAGA
TAGTATCTACATTGGGCTGG
back to top