CN181838

Overview
NameCN181838
Unique NameCN181838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2287 contig Csv1_Contig2287:1..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AAT2_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.163e-46
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = -3
Query:  295 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRMG 615
            V TILK S MY  WT++LK MADRI SMRQQLF+A+ ARGTPGDWSHIIKQIGMFTFTGLN EQV FMTKE+HIYMTSDGRISMAGLSSKTVPHL DA+HAAVTR+G
Sbjct:  299 VATILKSSDMYNNWTIELKEMADRIKSMRQQLFEAIQARGTPGDWSHIIKQIGMFTFTGLNKEQVEFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAMHAAVTRLG 405          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_ORYSJ (Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V TILKDS M+ EWT++LK MADRIISMRQQLFDAL  R TPGDWSHIIKQIGMFTFTGLNS+QVAFM +EYHIYMTSDGRISMAGLS +T+PHL DAIHAAVT++
Sbjct:  301 VATILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSDQVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKL 406          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = -3
Query:  304 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 615
            V  ILKD  +Y EWTL+LKAMADRIISMRQ+LF+AL A+GTPGDWSHI+KQIGMFTFTGLNSEQV FMT EYHIY+TSDGRISMAGLSS+TVPHL DAIHAAVT
Sbjct:  299 VAAILKDGDLYNEWTLELKAMADRIISMRQELFNALQAKGTPGDWSHIVKQIGMFTFTGLNSEQVTFMTNEYHIYLTSDGRISMAGLSSRTVPHLADAIHAAVT 402          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AAT3_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = -3
Query:  301 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 615
            V  IL+D  ++ EWTL+LKAMADRIISMR+QLF+AL  RGTPGDWSHIIKQIGMFTFTGLN  QV+FMTKEYHIYMTSDGRISMAGLSSKTVPHL DAIHA VT+
Sbjct:  343 VAVILRDKNLFNEWTLELKAMADRIISMRKQLFEALRTRGTPGDWSHIIKQIGMFTFTGLNPAQVSFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAVVTK 447          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 86/106 (81.13%), Postives = 95/106 (89.62%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V  ILKD  +Y +WT++LKAMADRII+MRQQLFDAL ARGTPGDWSHIIKQIGMFTFTGLN EQV+ +TKEYHIY+TSDGRISMAGLSSKTVPHL  AIHA VTR+
Sbjct:  312 VAAILKDRDLYNDWTIELKAMADRIINMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGLNPEQVSILTKEYHIYLTSDGRISMAGLSSKTVPHLAHAIHAVVTRV 417          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AAT4_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 2 OS=Arabidopsis thaliana GN=ASP4 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.201e-42
Identity = 83/106 (78.30%), Postives = 90/106 (84.91%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V TILK+S MY +WT++LK MADRIISMRQQL+ AL ARGTPGDWSHIIK IGMFTFTGL+ EQV  M KEYHIYMT DGRISMA LSSKTVP L DAIHA VTR+
Sbjct:  297 VATILKNSDMYNDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTFTGLSEEQVRLMAKEYHIYMTYDGRISMASLSSKTVPQLADAIHAVVTRI 402          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_MOUSE (Aspartate aminotransferase, cytoplasmic OS=Mus musculus GN=Got1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.782e-24
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V   L D  ++KEW   +K MADRI++MR +L   L A  TPG WSHI +QIGMF+FTGLN +QV ++  E HIY+   GRI+M GL++K + ++  +IH AVT++
Sbjct:  307 VAATLSDPELFKEWKGNVKTMADRILTMRSELRARLEALKTPGTWSHITEQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 412          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_HORSE (Aspartate aminotransferase, cytoplasmic OS=Equus caballus GN=GOT1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  301 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 615
            V   L D  ++KEWT  +K MADRI+SMR +L   L A  TPG W+HI +QIGMF+FTGLN +QV ++  + HIY+   GRI+M GL++K + ++  +IH AVT+
Sbjct:  307 VAFTLSDPGLFKEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITEQIGMFSFTGLNPKQVEYLVNQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTK 411          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_CHICK (Aspartate aminotransferase, cytoplasmic OS=Gallus gallus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V T L    ++ EW   +K MADR++ MR +L   L + GTPG W+HI  QIGMF+FTGLN +QV +M KE HIY+ + GRI+M GL++K + ++  +IH AVT++
Sbjct:  306 VATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGTWNHITDQIGMFSFTGLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSIHEAVTKI 411          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_PIG (Aspartate aminotransferase, cytoplasmic OS=Sus scrofa GN=GOT1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 5.184e-24
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V   L D  ++ EWT  +K MADRI+SMR +L   L A  TPG W+HI  QIGMF+FTGLN +QV ++  E HIY+   GRI+M GL++K + ++  +IH AVT++
Sbjct:  307 VARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINEKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 412          
The following BLAST results are available for this feature:
BLAST of CN181838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
AAT2_ARATH2.163e-4683.18Aspartate aminotransferase, cytoplasmic isozyme 1 ... [more]
AATC_ORYSJ8.219e-4682.08Aspartate aminotransferase, cytoplasmic OS=Oryza s... [more]
AATC_DAUCA8.219e-4683.65Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AAT3_ARATH6.958e-4581.90Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AAT1_MEDSA6.958e-4581.13Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
AAT4_ARATH7.201e-4278.30Aspartate aminotransferase, cytoplasmic isozyme 2 ... [more]
AATC_MOUSE1.782e-2449.06Aspartate aminotransferase, cytoplasmic OS=Mus mus... [more]
AATC_HORSE2.327e-2449.52Aspartate aminotransferase, cytoplasmic OS=Equus c... [more]
AATC_CHICK2.327e-2448.11Aspartate aminotransferase, cytoplasmic OS=Gallus ... [more]
AATC_PIG5.184e-2449.06Aspartate aminotransferase, cytoplasmic OS=Sus scr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181838 ID=CN181838; Name=CN181838; organism=Citrus sinensis; type=EST; length=617bp
CTATAAAATAGTCACCAAACGTTTCAAGGAGAGTTAAAAATGTAAATGGC
ATCTCCCCAAAGATAAATGCAAAAATAAATAACATCGCAACTTTCGTTTT
TCTTCTACTTAATAAACATGTCAAGTTTTGGTGGAAAGACAAGAATACAA
CACCAAAACCAAAAGAACAAAATTTTCTTAATGTAAAACCTTTATTTATG
CATTTTCTAGTTCTACAAACTCATTTTTGCATTGCTGAGGGTGACTGAAA
ACCAAACAATTCTTACGGCATGAATTCTTGTCTGATTAATCTTAGCCCAT
TCGGGTTACAGCAGCATGTATAGCATCGGTAAGATGAGGAACTGTCTTTG
AACTAAGACCTGCCATGCTAATCCTCCCATCAGATGTCATATAAATGTGA
TACTCCTTGGTCATGAAGGCAACTTGTTCACTGTTCAGCCCTGTGAATGT
AAACATTCCTATTTGCTTGATAATGTGACTCCAGTCTCCTGGAGTGCCTC
TAGCAGACAGAGCATCAAATAGTTGCTGACGCATGCTTATAATCCGGTCA
GCCATCGCTTTCAGTTTCAGAGTCCACTCTTTATACATAGTGCTGTCCTT
GAGAATTGTAACCACAA
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