CN181823

Overview
NameCN181823
Unique NameCN181823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181823 vs. ExPASy Swiss-Prot
Match: AHP1_ARATH (Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.074e-35
Identity = 69/116 (59.48%), Postives = 90/116 (77.59%), Query Frame = -2
Query:  177 SNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEEKNIEGCQQYLQHLKQEYYLVKNKXXXXXXXXXXXLSAGGSIPAYEM 524
            SNPDFV++VV L+F+DS+R+LN+++++LDQQ VDF KV  HVHQLKGSSSSIGAQRV N C  FRSFCE++N+E C + LQ +KQEYYLVKN+           +++GG IPA E+
Sbjct:   37 SNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVASGGMIPAVEL 152          
BLAST of CN181823 vs. ExPASy Swiss-Prot
Match: AHP5_ARATH (Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.378e-23
Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = -2
Query:  177 PDFVAEVVNLYFKDSERLLNEITVALDQ-QNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEEKNIEGCQQYLQHLKQEYYLVKNKXXXXXXXXXXXLSAGGSIPAYEM 518
            PDFVAEVV+L+F D  +L+N ++++L++  NVDF +V   VHQLKGSSSS+GA+RV NVC +F+  C+ +N EGC + LQ +  EY ++K K           L AGG+IP  ++
Sbjct:   42 PDFVAEVVSLFFDDCSKLINTMSISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYKMLKTKLQDLFNLEKQILQAGGTIPQVDI 156          
BLAST of CN181823 vs. ExPASy Swiss-Prot
Match: AHP3_ARATH (Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.629e-22
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  177 NPDFVAEVVNLYFKDSERLLNEITVALDQQ-NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEEKNIEGCQQYLQHLKQEYYLVKNKXXXXXXXXXXXLSAGGSIPAYEM 521
            +PDFVAEVV L+F+D E+L++ +  ALDQ  NVDF  VG  VHQLKGSSSS+GA+RV  +C   +  C+ +N EGC + LQ +  EY  +K K           + AGG IP  ++
Sbjct:   40 SPDFVAEVVTLFFEDCEKLISNMARALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQDLFNLEQQIVQAGGRIPQVDI 155          
BLAST of CN181823 vs. ExPASy Swiss-Prot
Match: AHP2_ARATH (Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = -2
Query:  177 NPDFVAEVVNLYFKDSERLLNEITVALDQQN-VDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEEKNIEGCQQYLQHLKQEYYLVKNKXXXXXXXXXXXLSAGGSIPAYEM 521
            +PDFV+EV++L+F+D  +L++ +  ALD    VDF++VG  VHQLKGSSSS+GA+RV  +C +F+  CE KN EGC + LQ +  EY  +K K           + AGG +P  ++
Sbjct:   40 SPDFVSEVLSLFFEDCVKLISNMARALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYKALKTKLQDMFNLEKQIIQAGGIVPQVDI 155          
BLAST of CN181823 vs. ExPASy Swiss-Prot
Match: AHP4_ARATH (Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 5.482e-20
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  246 SNPDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEEKNIEGCQQYLQHLKQEYYLVKNK 524
            +NP+FV EV  LYFKDS RL+N I  AL++ + DF ++  ++HQ KGSS+SIGA +V   CT FR +C   N EGC +  Q LK+E+  ++ K
Sbjct:   26 ANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMHQFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKK 118          
BLAST of CN181823 vs. ExPASy Swiss-Prot
Match: HP1_ORYSJ (Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.221e-19
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = -2
Query:  246 PDFVAEVVNLYFKDSERLLNEITVALDQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEEKNIEGCQQYLQHLKQEYYLVKNK 518
            P FV+EVV L+  D++R++NEI   L+Q  V+F KV  +VHQLKGSS+S+GAQ+V   C  FR FC++K+ +GC   L  ++ ++Y ++NK
Sbjct:   40 PGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNK 130          
BLAST of CN181823 vs. ExPASy Swiss-Prot
Match: AHP6_ARATH (Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.303e-18
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = -2
Query:  249 SNPDFVAEVVNLYFKDSERLLNEITVAL-DQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEEKNIEGCQQYLQHLKQEYYLVKN 524
            ++P+FV +V+N+YF +SE+LL  + + L D++  D+ K+G H++QL GSSSSIGA+RV NVC AFRS  E  N  GC + L+ ++ EY+ +KN
Sbjct:   40 TSPNFVYDVINIYFDESEKLLRNLRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYHYLKN 132          
The following BLAST results are available for this feature:
BLAST of CN181823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AHP1_ARATH2.074e-3559.48Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP5_ARATH2.378e-2346.96Histidine-containing phosphotransfer protein 5 OS=... [more]
AHP3_ARATH2.629e-2246.55Histidine-containing phosphotransfer protein 3 OS=... [more]
AHP2_ARATH1.305e-2143.97Histidine-containing phosphotransfer protein 2 OS=... [more]
AHP4_ARATH5.482e-2048.39Histidine-containing phosphotransfer protein 4 OS=... [more]
HP1_ORYSJ1.221e-1947.25Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP6_ARATH2.303e-1848.39Histidine-containing phosphotransfer protein 6 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001I14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181823 ID=CN181823; Name=CN181823; organism=Citrus sinensis; type=EST; length=525bp
TTACATACAATACAAGCTGAAGCTCGAAAGCTGGCTTAACCTTAACCCTC
TAGTAGCTTAAATGATTAACTACTAAAACTGACGGAAGTACAACAAAGTA
ACAAAAACACCTCTACAGAGCCAAAAGTCCACACAGCTTTGTTGCTTTAA
TTTGCCTGCAGATCATAAATCTACCGCATCTCATATGCAGGAATTGACCC
GCCTGCTGACAATAGTTGTTGCTGAAGCTGGAACAGAGTCTGAAGCTTAT
TTTTCACAAGGTAATACTCTTGCTTCAAATGTTGCAGATATTGCTGGCAC
CCTTCAATGTTCTTTTCTTCGCAAAAGCTGCGAAAGGCCGTGCATACATT
ATTAACTCTCTGTGCACCAATGCTGGAGCTGCTACCCTTCAACTGATGAA
CATGGCCACCCACCTTTGTGAAATCTACATTCTGCTGGTCTAAAGCTACG
GTGATCTCATTGAGAAGCCTTTCAGAGTCTTTAAAGTAAAGATTCACCAC
TTCAGCAACAAAATCTGGGTTGCTC
back to top