CN181818

Overview
NameCN181818
Unique NameCN181818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2284 contig Csv1_Contig2284:1..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.451e-66
Identity = 124/155 (80.00%), Postives = 137/155 (88.39%), Query Frame = -1
Query:  173 LHALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 637
            LHALNVQIF+KMH SD+AE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIFQDFSEKYPMT LILNGKAVCCMHMGNF+EAE            DPETLANLVVCSLH GKS+SRYLNQLKL+HP+H+LVKRA+S +++FERALQS A
Sbjct:  138 LHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.219e-64
Identity = 117/155 (75.48%), Postives = 137/155 (88.39%), Query Frame = -1
Query:  173 LHALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 637
            LHALNVQIF+KMH SDYAE+QL+ MQQIDEDHTLTQLANAWL++AVGGSKI+EAYLIFQDF+EKYPMTG++LNGKAVCCMHMG+FDEAE            DPETLANL+VC+LH GK +SRYL+QLKL+HPDH+LVKRA S +++FERALQ+VA
Sbjct:  133 LHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFERALQAVA 287          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.024e-62
Identity = 118/155 (76.13%), Postives = 135/155 (87.10%), Query Frame = -1
Query:  173 LHALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 637
            L+ALNVQIF+KMH ++YAE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIF+DFSEKYPMT LILNGKAVCCM MGNFDEAE            DPETLANLVVCSLH GKS+SR+L+QLKL+HP+H+LVKR SS +++FERA+Q VA
Sbjct:  139 LYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.453e-56
Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = -1
Query:  173 LHALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 637
            L A+NVQI L+MH SD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEG           D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct:  143 LLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.453e-56
Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = -1
Query:  173 LHALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 637
            L A+NVQI L+MH SD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEG           D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct:  143 LLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.487e-32
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = -1
Query:  173 ALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 631
            A+ +QI LK+   D A ++L+ MQ+ DED TLTQLA AW+NLA+GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G +D+AEG            PETL N VV S H GK    T+RYL+QLK  H +H  +K   + +  F+R     A
Sbjct:  150 AMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINFVVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQYA 305          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 70/156 (44.87%), Postives = 95/156 (60.90%), Query Frame = -1
Query:  173 ALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 631
            A+ VQI LK+   D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:  150 AMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 70/156 (44.87%), Postives = 95/156 (60.90%), Query Frame = -1
Query:  173 ALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 631
            A+ VQI LK+   D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:  150 AMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = -1
Query:  182 ALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 631
            A+ +QI LK+   D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R ALQ
Sbjct:  150 AMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 303          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = -1
Query:  173 ALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 631
            A+ +QI LK+   D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R     A
Sbjct:  150 AMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDRLAMQYA 305          
The following BLAST results are available for this feature:
BLAST of CN181818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
COPE1_ARATH3.451e-6680.00Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ4.219e-6475.48Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ARATH3.024e-6276.13Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE2_ORYSJ1.453e-5670.32Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI1.453e-5670.32Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_CHICK9.487e-3245.51Coatomer subunit epsilon OS=Gallus gallus GN=COPE ... [more]
COPE_PONAB1.049e-3044.87Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_HUMAN1.049e-3044.87Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]
COPE_CRIGR1.789e-3047.40Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]
COPE_MOUSE2.337e-3045.51Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181818 ID=CN181818; Name=CN181818; organism=Citrus sinensis; type=EST; length=637bp
GAGGATTTCTTGAAATATTTAACATATAGAGACGTATCTTTATCCAAGAA
TTCAAAAAGGGTAAATACCCAACTCTATGCTAACAAACACAATCTTTCAA
ATCAATCATATACTTCTCTTGTAGGTTACAAAAATCATTCACCTCTTGGC
CCCAAAATGACTCTAGTTTTCAGGCAACAGATTGAAGTGCTCTTTCAAAG
CTCTCATCTCCGGATGAAGCACGCTTGACAAGCATGTGGTCTGGGTGTGT
AAGCTTCAACTGGTTGAGGTAACGTGAAGTTGATTTTCCTTGGTGAAGAC
TGCATACAACCAGGTTGGCAAGAGTTTCTGGATCTTTAGCATCCTTGTTG
AGTGCATCAAGCAACAATCCTTCAGCTTCATCAAAGTTCCCCATATGCAT
GCAGCAAACAGCCTTTCCATTCAAGATCAACCCTGTCATTGGATACTTCT
CAGAGAAATCTTGAAAGATGAGATATGCTTCCTGTATCTTGGAACCACCC
ACTGCCAAATTCAACCAAGCATTTGCAAGTTGAGTTAGGGTGTGGTCCTC
ATCAATCTGTTGCATGGCCCTCAGCTGTCTCTCTGCATAGTCAGAACTGT
GCATCTTAAGGAATATTTGGACATTCAATGCATGTAA
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