CN188730
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.846e-67 Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEE+KFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKIT+FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSF TIH+QDA GH Sbjct: 84 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGH 212 HSP 2 Score: 152.525 bits (384), Expect = 2.875e-36 Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKV 318 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++ILMQRH+LVD K+ Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKI 76
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 1.728e-65 Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSF TIHIQD+ GH Sbjct: 88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGH 216 HSP 2 Score: 176.022 bits (445), Expect = 2.428e-43 Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMD S Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.257e-65 Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSF T+HIQD+ GH Sbjct: 88 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGH 216 HSP 2 Score: 174.096 bits (440), Expect = 9.227e-43 Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR V+VD KVRTDKTYPAGFMD S Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVS 91
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4) HSP 1 Score: 249.21 bits (635), Expect = 2.257e-65 Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSF TIHIQD+ GH Sbjct: 88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGH 216 HSP 2 Score: 176.022 bits (445), Expect = 2.428e-43 Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMD S Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.257e-65 Identity = 119/129 (92.25%), Postives = 124/129 (96.12%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI EFIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSF TIHIQD+ GH Sbjct: 88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGH 216 HSP 2 Score: 176.022 bits (445), Expect = 2.428e-43 Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMD S Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.463e-64 Identity = 115/129 (89.15%), Postives = 125/129 (96.90%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DV+SIPKTNEN+RLLYDTKGRFRLH IRDE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIK+DLETNKI +FIKFDVGNVVMVTGGRN GRVG+IKNREKHKGSF TIH++D+LGH Sbjct: 88 DVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGH 216 HSP 2 Score: 178.718 bits (452), Expect = 3.746e-44 Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMD Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMD 88
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3) HSP 1 Score: 241.891 bits (616), Expect = 3.603e-63 Identity = 112/129 (86.82%), Postives = 124/129 (96.12%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DV+SIPKT EN+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLETNKI +FIKFDVGNVVMVTGGRN GRVG+IKNREKHKGSF TIH++DALGH Sbjct: 88 DVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGH 216 HSP 2 Score: 178.718 bits (452), Expect = 3.746e-44 Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMD Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMD 88
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.336e-62 Identity = 114/129 (88.37%), Postives = 122/129 (94.57%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DVVSIPKTNE+FRLLYDTKGRF LH+I +E KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG+IKNREKHKGSF TIH+QDA GH Sbjct: 88 DVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGH 216 HSP 2 Score: 179.104 bits (453), Expect = 2.868e-44 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV+VD KVRTDKTYPAGFMD S Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVS 91
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2) HSP 1 Score: 189.889 bits (481), Expect = 1.625e-47 Identity = 87/129 (67.44%), Postives = 106/129 (82.17%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DV+SI KT ENFRL+YDTKGRF +H I EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF +H++DA G+ Sbjct: 88 DVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGN 216 HSP 2 Score: 139.428 bits (350), Expect = 2.519e-32 Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +D KVRTD TYPAGFMD Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMD 88
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3) HSP 1 Score: 189.504 bits (480), Expect = 2.122e-47 Identity = 84/129 (65.12%), Postives = 107/129 (82.95%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*TIHIQDALGH 874 DV+SI KT ENFRL+YD KGRF +H I +EEAK+KLCKV+ + G KGIP++ T+D RTIRYPDP+IKANDT+++DLET KITEFIKFD GN+ MVTGG N GR+G+I NRE+H GSF +H++D+ G+ Sbjct: 88 DVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGN 216 HSP 2 Score: 139.813 bits (351), Expect = 1.928e-32 Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 1 Query: 91 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + VD KVRTD TYPAGFMD Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDITYPAGFMD 88 The following BLAST results are available for this feature:
BLAST of CN188730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188730 ID=CN188730; Name=CN188730; organism=Citrus sinensis; type=EST; length=874bpback to top |